Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03600

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03595 and BPHYT_RS03600 are separated by 25 nucleotidesBPHYT_RS03600 and BPHYT_RS03605 are separated by 351 nucleotides BPHYT_RS03595: BPHYT_RS03595 - chaperone protein DnaJ, at 817,072 to 818,211 _RS03595 BPHYT_RS03600: BPHYT_RS03600 - anthranilate synthase, at 818,237 to 820,153 _RS03600 BPHYT_RS03605: BPHYT_RS03605 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 820,505 to 821,320 _RS03605 Position (kb) 818 819 820 821Strain fitness (log2 ratio) -1 0 1at 818.236 kb on + strandat 818.236 kb on + strandat 818.237 kb on - strandat 818.237 kb on - strandat 818.696 kb on + strand, within BPHYT_RS03600at 818.708 kb on + strand, within BPHYT_RS03600at 818.708 kb on + strand, within BPHYT_RS03600at 818.709 kb on - strand, within BPHYT_RS03600at 818.733 kb on + strand, within BPHYT_RS03600at 818.733 kb on + strand, within BPHYT_RS03600at 819.239 kb on + strand, within BPHYT_RS03600at 819.240 kb on - strand, within BPHYT_RS03600at 819.240 kb on - strand, within BPHYT_RS03600at 819.240 kb on - strand, within BPHYT_RS03600at 819.527 kb on + strand, within BPHYT_RS03600at 819.527 kb on + strand, within BPHYT_RS03600at 819.527 kb on + strand, within BPHYT_RS03600at 819.527 kb on + strand, within BPHYT_RS03600at 819.527 kb on + strand, within BPHYT_RS03600at 819.528 kb on - strand, within BPHYT_RS03600at 819.528 kb on - strand, within BPHYT_RS03600at 819.550 kb on - strand, within BPHYT_RS03600at 819.851 kb on + strand, within BPHYT_RS03600at 820.155 kb on - strandat 820.417 kb on - strandat 820.417 kb on - strandat 820.417 kb on - strandat 820.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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818,236 + -1.3
818,236 + +0.4
818,237 - +0.6
818,237 - -0.2
818,696 + BPHYT_RS03600 0.24 -0.1
818,708 + BPHYT_RS03600 0.25 +0.7
818,708 + BPHYT_RS03600 0.25 +0.2
818,709 - BPHYT_RS03600 0.25 +0.2
818,733 + BPHYT_RS03600 0.26 +0.6
818,733 + BPHYT_RS03600 0.26 +0.6
819,239 + BPHYT_RS03600 0.52 +0.4
819,240 - BPHYT_RS03600 0.52 +0.8
819,240 - BPHYT_RS03600 0.52 +0.6
819,240 - BPHYT_RS03600 0.52 +0.8
819,527 + BPHYT_RS03600 0.67 +0.5
819,527 + BPHYT_RS03600 0.67 +0.0
819,527 + BPHYT_RS03600 0.67 -0.4
819,527 + BPHYT_RS03600 0.67 -1.7
819,527 + BPHYT_RS03600 0.67 -0.4
819,528 - BPHYT_RS03600 0.67 +0.8
819,528 - BPHYT_RS03600 0.67 +0.8
819,550 - BPHYT_RS03600 0.68 -0.6
819,851 + BPHYT_RS03600 0.84 +1.0
820,155 - -0.8
820,417 - +0.7
820,417 - -0.2
820,417 - -0.2
820,514 - +1.3

Or see this region's nucleotide sequence