Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03510 and BPHYT_RS03515 are separated by 69 nucleotides BPHYT_RS03515 and BPHYT_RS03520 are separated by 216 nucleotides BPHYT_RS03520 and BPHYT_RS03525 are separated by 73 nucleotides
BPHYT_RS03510: BPHYT_RS03510 - FAD-binding protein, at 791,409 to 792,902
_RS03510
BPHYT_RS03515: BPHYT_RS03515 - D-lactate dehydrogenase, at 792,972 to 794,387
_RS03515
BPHYT_RS03520: BPHYT_RS03520 - ATP--cobalamin adenosyltransferase, at 794,604 to 795,158
_RS03520
BPHYT_RS03525: BPHYT_RS03525 - XRE family transcriptional regulator, at 795,232 to 795,564
_RS03525
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -2
-1
0
1 at 792.033 kb on + strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.377 kb on + strand, within BPHYT_RS03510 at 792.377 kb on + strand, within BPHYT_RS03510 at 792.394 kb on + strand, within BPHYT_RS03510 at 792.479 kb on - strand, within BPHYT_RS03510 at 792.482 kb on - strand, within BPHYT_RS03510 at 792.491 kb on - strand, within BPHYT_RS03510 at 792.556 kb on + strand, within BPHYT_RS03510 at 792.870 kb on + strand at 792.870 kb on + strand at 792.871 kb on - strand at 792.966 kb on + strand at 792.966 kb on + strand at 792.966 kb on + strand at 793.037 kb on + strand at 793.626 kb on + strand, within BPHYT_RS03515 at 793.720 kb on + strand, within BPHYT_RS03515 at 793.793 kb on - strand, within BPHYT_RS03515 at 793.897 kb on - strand, within BPHYT_RS03515 at 793.990 kb on - strand, within BPHYT_RS03515 at 794.168 kb on - strand, within BPHYT_RS03515 at 794.332 kb on - strand at 794.401 kb on + strand at 794.401 kb on + strand at 794.485 kb on + strand at 794.486 kb on - strand at 794.487 kb on + strand at 794.590 kb on - strand at 795.054 kb on + strand, within BPHYT_RS03520 at 795.054 kb on + strand, within BPHYT_RS03520 at 795.156 kb on + strand at 795.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 792,033 + BPHYT_RS03510 0.42 -2.7 792,034 - BPHYT_RS03510 0.42 +0.2 792,034 - BPHYT_RS03510 0.42 -0.1 792,034 - BPHYT_RS03510 0.42 -2.0 792,377 + BPHYT_RS03510 0.65 +0.4 792,377 + BPHYT_RS03510 0.65 +1.3 792,394 + BPHYT_RS03510 0.66 -0.1 792,479 - BPHYT_RS03510 0.72 -0.4 792,482 - BPHYT_RS03510 0.72 -1.5 792,491 - BPHYT_RS03510 0.72 -0.7 792,556 + BPHYT_RS03510 0.77 +1.0 792,870 + +0.4 792,870 + +0.2 792,871 - -0.3 792,966 + -0.7 792,966 + +0.4 792,966 + -0.0 793,037 + +0.1 793,626 + BPHYT_RS03515 0.46 -0.2 793,720 + BPHYT_RS03515 0.53 -1.4 793,793 - BPHYT_RS03515 0.58 -0.2 793,897 - BPHYT_RS03515 0.65 -0.1 793,990 - BPHYT_RS03515 0.72 -1.3 794,168 - BPHYT_RS03515 0.84 -0.2 794,332 - +1.4 794,401 + -0.2 794,401 + +0.9 794,485 + -0.3 794,486 - -2.1 794,487 + +0.0 794,590 - +0.3 795,054 + BPHYT_RS03520 0.81 +0.0 795,054 + BPHYT_RS03520 0.81 +0.2 795,156 + +0.6 795,175 - -0.7
Or see this region's nucleotide sequence