Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03485
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X |
---|---|---|---|---|---|
remove | |||||
785,415 | + | -0.1 | |||
785,658 | - | -0.5 | |||
785,788 | + | BPHYT_RS03480 | 0.22 | +0.2 | |
785,788 | + | BPHYT_RS03480 | 0.22 | +0.2 | |
785,788 | + | BPHYT_RS03480 | 0.22 | -0.4 | |
785,788 | + | BPHYT_RS03480 | 0.22 | +0.2 | |
785,789 | - | BPHYT_RS03480 | 0.22 | +0.6 | |
785,789 | - | BPHYT_RS03480 | 0.22 | -0.4 | |
785,876 | - | BPHYT_RS03480 | 0.39 | +0.7 | |
786,175 | + | -3.3 | |||
786,175 | + | -1.0 | |||
786,176 | - | -0.6 | |||
786,179 | + | +0.4 | |||
786,244 | - | -0.4 | |||
786,244 | - | -1.1 | |||
786,355 | - | -2.0 | |||
787,240 | - | +0.1 | |||
788,174 | + | -3.3 | |||
788,174 | + | +0.0 | |||
788,211 | - | +0.7 | |||
788,211 | - | -0.7 |
Or see this region's nucleotide sequence