Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03485

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03480 and BPHYT_RS03485 are separated by 218 nucleotidesBPHYT_RS03485 and BPHYT_RS03490 are separated by 61 nucleotidesBPHYT_RS03490 and BPHYT_RS03495 are separated by 63 nucleotides BPHYT_RS03480: BPHYT_RS03480 - ferritin, at 785,680 to 786,177 _RS03480 BPHYT_RS03485: BPHYT_RS03485 - 4-hydroxybenzoate octaprenyltransferase, at 786,396 to 787,259 _RS03485 BPHYT_RS03490: BPHYT_RS03490 - pyrroline-5-carboxylate reductase, at 787,321 to 788,136 _RS03490 BPHYT_RS03495: BPHYT_RS03495 - hypothetical protein, at 788,200 to 788,898 _RS03495 Position (kb) 786 787 788Strain fitness (log2 ratio) -3 -2 -1 0 1at 785.415 kb on + strandat 785.658 kb on - strandat 785.788 kb on + strand, within BPHYT_RS03480at 785.788 kb on + strand, within BPHYT_RS03480at 785.788 kb on + strand, within BPHYT_RS03480at 785.788 kb on + strand, within BPHYT_RS03480at 785.789 kb on - strand, within BPHYT_RS03480at 785.789 kb on - strand, within BPHYT_RS03480at 785.876 kb on - strand, within BPHYT_RS03480at 786.175 kb on + strandat 786.175 kb on + strandat 786.176 kb on - strandat 786.179 kb on + strandat 786.244 kb on - strandat 786.244 kb on - strandat 786.355 kb on - strandat 787.240 kb on - strandat 788.174 kb on + strandat 788.174 kb on + strandat 788.211 kb on - strandat 788.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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785,415 + -0.1
785,658 - -0.5
785,788 + BPHYT_RS03480 0.22 +0.2
785,788 + BPHYT_RS03480 0.22 +0.2
785,788 + BPHYT_RS03480 0.22 -0.4
785,788 + BPHYT_RS03480 0.22 +0.2
785,789 - BPHYT_RS03480 0.22 +0.6
785,789 - BPHYT_RS03480 0.22 -0.4
785,876 - BPHYT_RS03480 0.39 +0.7
786,175 + -3.3
786,175 + -1.0
786,176 - -0.6
786,179 + +0.4
786,244 - -0.4
786,244 - -1.1
786,355 - -2.0
787,240 - +0.1
788,174 + -3.3
788,174 + +0.0
788,211 - +0.7
788,211 - -0.7

Or see this region's nucleotide sequence