Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02550 and BPHYT_RS02555 are separated by 236 nucleotides BPHYT_RS02555 and BPHYT_RS02560 are separated by 101 nucleotides
BPHYT_RS02550: BPHYT_RS02550 - ammonia channel protein, at 578,436 to 579,944
_RS02550
BPHYT_RS02555: BPHYT_RS02555 - glutamate--cysteine ligase, at 580,181 to 581,470
_RS02555
BPHYT_RS02560: BPHYT_RS02560 - glutathione synthetase, at 581,572 to 582,528
_RS02560
Position (kb)
580
581
582 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 579.353 kb on + strand, within BPHYT_RS02550 at 579.353 kb on + strand, within BPHYT_RS02550 at 579.354 kb on - strand, within BPHYT_RS02550 at 579.822 kb on + strand at 579.840 kb on + strand at 579.841 kb on - strand at 579.841 kb on - strand at 579.942 kb on + strand at 579.943 kb on - strand at 579.943 kb on - strand at 579.985 kb on - strand at 580.041 kb on + strand at 580.041 kb on + strand at 580.048 kb on + strand at 580.048 kb on + strand at 580.048 kb on + strand at 580.049 kb on - strand at 580.069 kb on + strand at 580.070 kb on - strand at 580.070 kb on - strand at 580.081 kb on - strand at 580.149 kb on - strand at 580.194 kb on + strand at 580.195 kb on - strand at 580.195 kb on - strand at 580.308 kb on - strand at 580.505 kb on + strand, within BPHYT_RS02555 at 580.757 kb on + strand, within BPHYT_RS02555 at 580.757 kb on + strand, within BPHYT_RS02555 at 580.758 kb on - strand at 580.758 kb on - strand, within BPHYT_RS02555 at 580.792 kb on - strand, within BPHYT_RS02555 at 580.820 kb on + strand, within BPHYT_RS02555 at 580.883 kb on + strand, within BPHYT_RS02555 at 580.884 kb on - strand, within BPHYT_RS02555 at 580.884 kb on - strand, within BPHYT_RS02555 at 580.983 kb on - strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.012 kb on + strand, within BPHYT_RS02555 at 581.013 kb on - strand, within BPHYT_RS02555 at 581.013 kb on - strand, within BPHYT_RS02555 at 581.043 kb on - strand, within BPHYT_RS02555 at 581.171 kb on + strand, within BPHYT_RS02555 at 581.171 kb on + strand, within BPHYT_RS02555 at 581.172 kb on - strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.216 kb on + strand, within BPHYT_RS02555 at 581.231 kb on + strand, within BPHYT_RS02555 at 581.384 kb on + strand at 581.385 kb on - strand at 581.385 kb on - strand at 581.385 kb on - strand at 581.386 kb on + strand at 581.386 kb on + strand at 581.386 kb on + strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.387 kb on - strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.390 kb on + strand at 581.391 kb on - strand at 581.391 kb on - strand at 581.468 kb on + strand at 581.469 kb on - strand at 581.525 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.527 kb on + strand at 581.528 kb on - strand at 581.528 kb on - strand at 581.532 kb on - strand at 581.617 kb on + strand at 581.632 kb on + strand at 581.674 kb on + strand, within BPHYT_RS02560 at 581.674 kb on + strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.675 kb on - strand, within BPHYT_RS02560 at 581.739 kb on + strand, within BPHYT_RS02560 at 581.739 kb on + strand, within BPHYT_RS02560 at 581.740 kb on - strand, within BPHYT_RS02560 at 581.740 kb on - strand, within BPHYT_RS02560 at 581.866 kb on + strand, within BPHYT_RS02560 at 581.866 kb on + strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560 at 581.867 kb on - strand, within BPHYT_RS02560
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 579,353 + BPHYT_RS02550 0.61 -0.3 579,353 + BPHYT_RS02550 0.61 +0.6 579,354 - BPHYT_RS02550 0.61 -0.3 579,822 + +0.3 579,840 + +0.3 579,841 - -0.3 579,841 - -0.9 579,942 + +0.6 579,943 - -2.5 579,943 - +0.3 579,985 - -0.3 580,041 + +0.3 580,041 + -1.0 580,048 + +1.2 580,048 + +0.0 580,048 + -2.6 580,049 - -0.4 580,069 + +0.3 580,070 - +0.2 580,070 - +0.6 580,081 - -3.1 580,149 - -0.6 580,194 + -0.5 580,195 - -4.4 580,195 - -1.3 580,308 - -1.7 580,505 + BPHYT_RS02555 0.25 -2.4 580,757 + BPHYT_RS02555 0.45 -1.5 580,757 + BPHYT_RS02555 0.45 -1.7 580,758 - +0.1 580,758 - BPHYT_RS02555 0.45 -2.5 580,792 - BPHYT_RS02555 0.47 -1.6 580,820 + BPHYT_RS02555 0.50 -4.9 580,883 + BPHYT_RS02555 0.54 -0.5 580,884 - BPHYT_RS02555 0.54 -3.5 580,884 - BPHYT_RS02555 0.54 -2.1 580,983 - BPHYT_RS02555 0.62 -2.4 581,012 + BPHYT_RS02555 0.64 -0.9 581,012 + BPHYT_RS02555 0.64 -1.1 581,012 + BPHYT_RS02555 0.64 -1.4 581,013 - BPHYT_RS02555 0.64 -4.1 581,013 - BPHYT_RS02555 0.64 -4.5 581,043 - BPHYT_RS02555 0.67 -3.1 581,171 + BPHYT_RS02555 0.77 -1.0 581,171 + BPHYT_RS02555 0.77 -1.4 581,172 - BPHYT_RS02555 0.77 -0.2 581,216 + BPHYT_RS02555 0.80 +2.1 581,216 + BPHYT_RS02555 0.80 -0.4 581,216 + BPHYT_RS02555 0.80 -2.0 581,231 + BPHYT_RS02555 0.81 -2.4 581,384 + -3.2 581,385 - -1.8 581,385 - -2.3 581,385 - -3.3 581,386 + -0.7 581,386 + -1.5 581,386 + -1.6 581,387 - -3.4 581,387 - -2.0 581,387 - -4.6 581,387 - -1.9 581,390 + -1.4 581,390 + -1.5 581,390 + -0.8 581,390 + -1.4 581,390 + -1.3 581,391 - -2.6 581,391 - -1.7 581,468 + +1.5 581,469 - -1.4 581,525 + -0.5 581,527 + +1.8 581,527 + -0.2 581,527 + -0.1 581,527 + -0.1 581,527 + -0.1 581,528 - -2.2 581,528 - -1.6 581,532 - -0.8 581,617 + -1.8 581,632 + -1.4 581,674 + BPHYT_RS02560 0.11 -2.7 581,674 + BPHYT_RS02560 0.11 +1.1 581,675 - BPHYT_RS02560 0.11 -2.5 581,675 - BPHYT_RS02560 0.11 -0.3 581,675 - BPHYT_RS02560 0.11 -0.8 581,739 + BPHYT_RS02560 0.17 -2.5 581,739 + BPHYT_RS02560 0.17 -3.2 581,740 - BPHYT_RS02560 0.18 -3.0 581,740 - BPHYT_RS02560 0.18 -1.1 581,866 + BPHYT_RS02560 0.31 -1.2 581,866 + BPHYT_RS02560 0.31 +2.8 581,867 - BPHYT_RS02560 0.31 -3.2 581,867 - BPHYT_RS02560 0.31 -0.9 581,867 - BPHYT_RS02560 0.31 -1.1 581,867 - BPHYT_RS02560 0.31 -2.7 581,867 - BPHYT_RS02560 0.31 -1.6
Or see this region's nucleotide sequence