Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02240 and BPHYT_RS02245 are separated by 85 nucleotides BPHYT_RS02245 and BPHYT_RS02250 are separated by 187 nucleotides BPHYT_RS02250 and BPHYT_RS02255 are separated by 76 nucleotides BPHYT_RS02255 and BPHYT_RS02260 are separated by 3 nucleotides
BPHYT_RS02240: BPHYT_RS02240 - isocitrate dehydrogenase kinase/phosphatase, at 514,158 to 515,996
_RS02240
BPHYT_RS02245: BPHYT_RS02245 - MerR family transcriptional regulator, at 516,082 to 516,486
_RS02245
BPHYT_RS02250: BPHYT_RS02250 - Zn-dependent hydrolase, at 516,674 to 517,747
_RS02250
BPHYT_RS02255: BPHYT_RS02255 - hypothetical protein, at 517,824 to 518,288
_RS02255
BPHYT_RS02260: BPHYT_RS02260 - hypothetical protein, at 518,292 to 518,660
_RS02260
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 515.719 kb on + strand, within BPHYT_RS02240 at 515.720 kb on - strand, within BPHYT_RS02240 at 515.816 kb on - strand at 515.823 kb on - strand at 516.042 kb on - strand at 516.263 kb on + strand, within BPHYT_RS02245 at 516.330 kb on + strand, within BPHYT_RS02245 at 516.357 kb on - strand, within BPHYT_RS02245 at 516.400 kb on + strand, within BPHYT_RS02245 at 516.473 kb on + strand at 516.473 kb on + strand at 516.591 kb on + strand at 517.215 kb on - strand, within BPHYT_RS02250 at 517.416 kb on + strand, within BPHYT_RS02250 at 517.468 kb on - strand, within BPHYT_RS02250 at 517.594 kb on + strand, within BPHYT_RS02250 at 517.822 kb on + strand at 517.825 kb on + strand at 517.825 kb on + strand at 517.826 kb on - strand at 518.003 kb on - strand, within BPHYT_RS02255 at 518.054 kb on + strand, within BPHYT_RS02255 at 518.056 kb on + strand, within BPHYT_RS02255 at 518.057 kb on - strand, within BPHYT_RS02255 at 518.091 kb on + strand, within BPHYT_RS02255 at 518.101 kb on + strand, within BPHYT_RS02255 at 518.101 kb on + strand, within BPHYT_RS02255 at 518.102 kb on - strand, within BPHYT_RS02255 at 518.162 kb on + strand at 518.162 kb on + strand, within BPHYT_RS02255 at 518.165 kb on - strand, within BPHYT_RS02255 at 518.165 kb on - strand, within BPHYT_RS02255 at 518.265 kb on - strand at 518.359 kb on + strand, within BPHYT_RS02260 at 518.360 kb on - strand, within BPHYT_RS02260 at 518.399 kb on - strand, within BPHYT_RS02260 at 518.443 kb on - strand, within BPHYT_RS02260 at 518.479 kb on - strand, within BPHYT_RS02260 at 518.485 kb on + strand, within BPHYT_RS02260 at 518.485 kb on + strand, within BPHYT_RS02260 at 518.515 kb on + strand, within BPHYT_RS02260 at 518.531 kb on - strand, within BPHYT_RS02260 at 518.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 515,719 + BPHYT_RS02240 0.85 +0.6 515,720 - BPHYT_RS02240 0.85 +0.3 515,816 - +1.5 515,823 - +0.0 516,042 - -1.2 516,263 + BPHYT_RS02245 0.45 +2.4 516,330 + BPHYT_RS02245 0.61 +0.7 516,357 - BPHYT_RS02245 0.68 +0.7 516,400 + BPHYT_RS02245 0.79 +2.0 516,473 + -1.6 516,473 + +0.2 516,591 + +0.5 517,215 - BPHYT_RS02250 0.50 -0.2 517,416 + BPHYT_RS02250 0.69 +0.0 517,468 - BPHYT_RS02250 0.74 +0.8 517,594 + BPHYT_RS02250 0.86 +0.7 517,822 + -0.4 517,825 + +0.8 517,825 + +1.7 517,826 - +0.9 518,003 - BPHYT_RS02255 0.38 -0.4 518,054 + BPHYT_RS02255 0.49 -0.6 518,056 + BPHYT_RS02255 0.50 +0.5 518,057 - BPHYT_RS02255 0.50 +0.9 518,091 + BPHYT_RS02255 0.57 +2.7 518,101 + BPHYT_RS02255 0.60 +0.6 518,101 + BPHYT_RS02255 0.60 -1.9 518,102 - BPHYT_RS02255 0.60 +0.5 518,162 + -0.3 518,162 + BPHYT_RS02255 0.73 +1.4 518,165 - BPHYT_RS02255 0.73 +2.9 518,165 - BPHYT_RS02255 0.73 +1.3 518,265 - +0.6 518,359 + BPHYT_RS02260 0.18 +0.2 518,360 - BPHYT_RS02260 0.18 +0.7 518,399 - BPHYT_RS02260 0.29 -1.0 518,443 - BPHYT_RS02260 0.41 +0.3 518,479 - BPHYT_RS02260 0.51 -1.0 518,485 + BPHYT_RS02260 0.52 +0.3 518,485 + BPHYT_RS02260 0.52 -0.4 518,515 + BPHYT_RS02260 0.60 +1.9 518,531 - BPHYT_RS02260 0.65 +1.0 518,646 - +0.4
Or see this region's nucleotide sequence