Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02245
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X |
---|---|---|---|---|---|
remove | |||||
515,109 | - | BPHYT_RS02240 | 0.52 | +0.5 | |
515,111 | - | BPHYT_RS02240 | 0.52 | +0.4 | |
515,338 | + | BPHYT_RS02240 | 0.64 | +0.7 | |
515,356 | + | BPHYT_RS02240 | 0.65 | -0.1 | |
515,548 | + | BPHYT_RS02240 | 0.76 | +0.5 | |
515,584 | + | BPHYT_RS02240 | 0.78 | +0.4 | |
515,584 | + | BPHYT_RS02240 | 0.78 | +0.6 | |
515,585 | - | BPHYT_RS02240 | 0.78 | +0.1 | |
515,719 | + | BPHYT_RS02240 | 0.85 | +0.6 | |
515,720 | - | BPHYT_RS02240 | 0.85 | +0.3 | |
515,816 | - | +1.5 | |||
515,823 | - | +0.0 | |||
516,042 | - | -1.2 | |||
516,263 | + | BPHYT_RS02245 | 0.45 | +2.4 | |
516,330 | + | BPHYT_RS02245 | 0.61 | +0.7 | |
516,357 | - | BPHYT_RS02245 | 0.68 | +0.7 | |
516,400 | + | BPHYT_RS02245 | 0.79 | +2.0 | |
516,473 | + | -1.6 | |||
516,473 | + | +0.2 | |||
516,591 | + | +0.5 | |||
517,215 | - | BPHYT_RS02250 | 0.50 | -0.2 | |
517,416 | + | BPHYT_RS02250 | 0.69 | +0.0 | |
517,468 | - | BPHYT_RS02250 | 0.74 | +0.8 |
Or see this region's nucleotide sequence