Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02245

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02240 and BPHYT_RS02245 are separated by 85 nucleotidesBPHYT_RS02245 and BPHYT_RS02250 are separated by 187 nucleotides BPHYT_RS02240: BPHYT_RS02240 - isocitrate dehydrogenase kinase/phosphatase, at 514,158 to 515,996 _RS02240 BPHYT_RS02245: BPHYT_RS02245 - MerR family transcriptional regulator, at 516,082 to 516,486 _RS02245 BPHYT_RS02250: BPHYT_RS02250 - Zn-dependent hydrolase, at 516,674 to 517,747 _RS02250 Position (kb) 516 517Strain fitness (log2 ratio) -1 0 1 2at 515.109 kb on - strand, within BPHYT_RS02240at 515.111 kb on - strand, within BPHYT_RS02240at 515.338 kb on + strand, within BPHYT_RS02240at 515.356 kb on + strand, within BPHYT_RS02240at 515.548 kb on + strand, within BPHYT_RS02240at 515.584 kb on + strand, within BPHYT_RS02240at 515.584 kb on + strand, within BPHYT_RS02240at 515.585 kb on - strand, within BPHYT_RS02240at 515.719 kb on + strand, within BPHYT_RS02240at 515.720 kb on - strand, within BPHYT_RS02240at 515.816 kb on - strandat 515.823 kb on - strandat 516.042 kb on - strandat 516.263 kb on + strand, within BPHYT_RS02245at 516.330 kb on + strand, within BPHYT_RS02245at 516.357 kb on - strand, within BPHYT_RS02245at 516.400 kb on + strand, within BPHYT_RS02245at 516.473 kb on + strandat 516.473 kb on + strandat 516.591 kb on + strandat 517.215 kb on - strand, within BPHYT_RS02250at 517.416 kb on + strand, within BPHYT_RS02250at 517.468 kb on - strand, within BPHYT_RS02250

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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515,109 - BPHYT_RS02240 0.52 +0.5
515,111 - BPHYT_RS02240 0.52 +0.4
515,338 + BPHYT_RS02240 0.64 +0.7
515,356 + BPHYT_RS02240 0.65 -0.1
515,548 + BPHYT_RS02240 0.76 +0.5
515,584 + BPHYT_RS02240 0.78 +0.4
515,584 + BPHYT_RS02240 0.78 +0.6
515,585 - BPHYT_RS02240 0.78 +0.1
515,719 + BPHYT_RS02240 0.85 +0.6
515,720 - BPHYT_RS02240 0.85 +0.3
515,816 - +1.5
515,823 - +0.0
516,042 - -1.2
516,263 + BPHYT_RS02245 0.45 +2.4
516,330 + BPHYT_RS02245 0.61 +0.7
516,357 - BPHYT_RS02245 0.68 +0.7
516,400 + BPHYT_RS02245 0.79 +2.0
516,473 + -1.6
516,473 + +0.2
516,591 + +0.5
517,215 - BPHYT_RS02250 0.50 -0.2
517,416 + BPHYT_RS02250 0.69 +0.0
517,468 - BPHYT_RS02250 0.74 +0.8

Or see this region's nucleotide sequence