Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02080 and BPHYT_RS02085 are separated by 82 nucleotides BPHYT_RS02085 and BPHYT_RS02090 are separated by 224 nucleotides
BPHYT_RS02080: BPHYT_RS02080 - LysR family transcriptional regulator, at 476,776 to 477,714
_RS02080
BPHYT_RS02085: BPHYT_RS02085 - methylmalonyl-CoA mutase, at 477,797 to 481,693
_RS02085
BPHYT_RS02090: BPHYT_RS02090 - 2-nitropropane dioxygenase, at 481,918 to 482,877
_RS02090
Position (kb) 477
478
479
480
481
482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 476.972 kb on - strand, within BPHYT_RS02080 at 477.149 kb on + strand, within BPHYT_RS02080 at 477.149 kb on + strand, within BPHYT_RS02080 at 477.150 kb on - strand, within BPHYT_RS02080 at 477.346 kb on + strand, within BPHYT_RS02080 at 477.346 kb on + strand, within BPHYT_RS02080 at 477.347 kb on - strand, within BPHYT_RS02080 at 477.347 kb on - strand, within BPHYT_RS02080 at 477.592 kb on + strand, within BPHYT_RS02080 at 477.593 kb on - strand, within BPHYT_RS02080 at 477.753 kb on - strand at 477.754 kb on + strand at 477.755 kb on - strand at 477.773 kb on + strand at 477.773 kb on + strand at 477.774 kb on - strand at 478.034 kb on + strand at 478.035 kb on - strand at 478.065 kb on - strand at 478.184 kb on + strand at 478.184 kb on + strand at 478.184 kb on + strand at 478.185 kb on - strand at 478.185 kb on - strand at 478.235 kb on - strand, within BPHYT_RS02085 at 478.832 kb on + strand, within BPHYT_RS02085 at 478.833 kb on - strand, within BPHYT_RS02085 at 478.958 kb on + strand, within BPHYT_RS02085 at 479.123 kb on + strand, within BPHYT_RS02085 at 479.123 kb on + strand, within BPHYT_RS02085 at 479.123 kb on + strand, within BPHYT_RS02085 at 479.123 kb on + strand, within BPHYT_RS02085 at 479.124 kb on - strand, within BPHYT_RS02085 at 479.124 kb on - strand, within BPHYT_RS02085 at 479.124 kb on - strand, within BPHYT_RS02085 at 479.124 kb on - strand, within BPHYT_RS02085 at 479.124 kb on - strand, within BPHYT_RS02085 at 479.332 kb on + strand, within BPHYT_RS02085 at 479.484 kb on - strand, within BPHYT_RS02085 at 479.484 kb on - strand, within BPHYT_RS02085 at 479.516 kb on + strand, within BPHYT_RS02085 at 479.602 kb on + strand, within BPHYT_RS02085 at 479.672 kb on - strand, within BPHYT_RS02085 at 479.978 kb on + strand, within BPHYT_RS02085 at 480.141 kb on - strand, within BPHYT_RS02085 at 480.141 kb on - strand, within BPHYT_RS02085 at 480.262 kb on + strand, within BPHYT_RS02085 at 480.262 kb on + strand, within BPHYT_RS02085 at 480.263 kb on - strand, within BPHYT_RS02085 at 480.342 kb on - strand, within BPHYT_RS02085 at 480.695 kb on + strand, within BPHYT_RS02085 at 480.696 kb on - strand, within BPHYT_RS02085 at 480.726 kb on - strand, within BPHYT_RS02085 at 480.815 kb on + strand, within BPHYT_RS02085 at 480.816 kb on - strand, within BPHYT_RS02085 at 480.816 kb on - strand, within BPHYT_RS02085 at 480.816 kb on - strand, within BPHYT_RS02085 at 480.828 kb on - strand, within BPHYT_RS02085 at 480.905 kb on + strand, within BPHYT_RS02085 at 480.995 kb on + strand, within BPHYT_RS02085 at 480.996 kb on - strand, within BPHYT_RS02085 at 481.373 kb on + strand at 481.373 kb on + strand at 481.373 kb on + strand at 481.373 kb on + strand at 481.374 kb on - strand at 481.374 kb on - strand at 481.374 kb on - strand at 481.420 kb on + strand at 481.420 kb on + strand at 481.687 kb on + strand at 481.688 kb on - strand at 481.691 kb on + strand at 481.691 kb on + strand at 481.692 kb on - strand at 481.692 kb on - strand at 481.953 kb on + strand at 481.954 kb on - strand at 481.954 kb on - strand at 481.955 kb on + strand at 482.144 kb on + strand, within BPHYT_RS02090 at 482.144 kb on + strand, within BPHYT_RS02090 at 482.145 kb on - strand, within BPHYT_RS02090 at 482.145 kb on - strand, within BPHYT_RS02090 at 482.145 kb on - strand, within BPHYT_RS02090 at 482.175 kb on + strand, within BPHYT_RS02090 at 482.178 kb on - strand, within BPHYT_RS02090 at 482.220 kb on - strand, within BPHYT_RS02090 at 482.270 kb on + strand, within BPHYT_RS02090 at 482.270 kb on + strand, within BPHYT_RS02090 at 482.271 kb on - strand, within BPHYT_RS02090 at 482.271 kb on - strand, within BPHYT_RS02090 at 482.271 kb on - strand, within BPHYT_RS02090 at 482.357 kb on - strand, within BPHYT_RS02090 at 482.357 kb on - strand, within BPHYT_RS02090 at 482.510 kb on + strand, within BPHYT_RS02090 at 482.510 kb on + strand, within BPHYT_RS02090 at 482.511 kb on - strand, within BPHYT_RS02090 at 482.514 kb on + strand, within BPHYT_RS02090 at 482.515 kb on - strand, within BPHYT_RS02090
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 476,972 - BPHYT_RS02080 0.21 -0.9 477,149 + BPHYT_RS02080 0.40 +1.1 477,149 + BPHYT_RS02080 0.40 +0.2 477,150 - BPHYT_RS02080 0.40 -0.4 477,346 + BPHYT_RS02080 0.61 +0.7 477,346 + BPHYT_RS02080 0.61 +0.1 477,347 - BPHYT_RS02080 0.61 +0.3 477,347 - BPHYT_RS02080 0.61 +0.7 477,592 + BPHYT_RS02080 0.87 -1.0 477,593 - BPHYT_RS02080 0.87 +0.5 477,753 - +0.3 477,754 + +0.2 477,755 - +0.1 477,773 + +1.0 477,773 + -0.5 477,774 - +0.0 478,034 + -0.3 478,035 - -0.7 478,065 - -0.4 478,184 + +0.5 478,184 + +0.4 478,184 + -1.1 478,185 - +0.2 478,185 - +0.2 478,235 - BPHYT_RS02085 0.11 +0.7 478,832 + BPHYT_RS02085 0.27 +1.1 478,833 - BPHYT_RS02085 0.27 +0.1 478,958 + BPHYT_RS02085 0.30 -0.3 479,123 + BPHYT_RS02085 0.34 -0.8 479,123 + BPHYT_RS02085 0.34 -1.3 479,123 + BPHYT_RS02085 0.34 +0.0 479,123 + BPHYT_RS02085 0.34 +0.2 479,124 - BPHYT_RS02085 0.34 +0.6 479,124 - BPHYT_RS02085 0.34 -0.7 479,124 - BPHYT_RS02085 0.34 -0.1 479,124 - BPHYT_RS02085 0.34 +0.4 479,124 - BPHYT_RS02085 0.34 +2.0 479,332 + BPHYT_RS02085 0.39 +0.7 479,484 - BPHYT_RS02085 0.43 -0.3 479,484 - BPHYT_RS02085 0.43 +1.2 479,516 + BPHYT_RS02085 0.44 +0.9 479,602 + BPHYT_RS02085 0.46 -0.1 479,672 - BPHYT_RS02085 0.48 +0.6 479,978 + BPHYT_RS02085 0.56 -0.1 480,141 - BPHYT_RS02085 0.60 +0.1 480,141 - BPHYT_RS02085 0.60 -0.5 480,262 + BPHYT_RS02085 0.63 +0.4 480,262 + BPHYT_RS02085 0.63 +0.1 480,263 - BPHYT_RS02085 0.63 +1.5 480,342 - BPHYT_RS02085 0.65 +1.4 480,695 + BPHYT_RS02085 0.74 -0.2 480,696 - BPHYT_RS02085 0.74 +0.1 480,726 - BPHYT_RS02085 0.75 +0.4 480,815 + BPHYT_RS02085 0.77 +0.3 480,816 - BPHYT_RS02085 0.77 -0.5 480,816 - BPHYT_RS02085 0.77 -0.4 480,816 - BPHYT_RS02085 0.77 +0.4 480,828 - BPHYT_RS02085 0.78 +0.2 480,905 + BPHYT_RS02085 0.80 +0.0 480,995 + BPHYT_RS02085 0.82 -1.1 480,996 - BPHYT_RS02085 0.82 +1.2 481,373 + -0.3 481,373 + +0.1 481,373 + -2.4 481,373 + -0.1 481,374 - +0.5 481,374 - -0.8 481,374 - -0.8 481,420 + +0.2 481,420 + +0.5 481,687 + +0.3 481,688 - +0.8 481,691 + +0.9 481,691 + +0.6 481,692 - +0.1 481,692 - -1.3 481,953 + +0.5 481,954 - +1.6 481,954 - -1.3 481,955 + -1.2 482,144 + BPHYT_RS02090 0.24 +0.0 482,144 + BPHYT_RS02090 0.24 +0.6 482,145 - BPHYT_RS02090 0.24 +1.5 482,145 - BPHYT_RS02090 0.24 -0.8 482,145 - BPHYT_RS02090 0.24 +0.8 482,175 + BPHYT_RS02090 0.27 +0.3 482,178 - BPHYT_RS02090 0.27 +0.9 482,220 - BPHYT_RS02090 0.31 +0.9 482,270 + BPHYT_RS02090 0.37 -0.2 482,270 + BPHYT_RS02090 0.37 +0.3 482,271 - BPHYT_RS02090 0.37 +0.3 482,271 - BPHYT_RS02090 0.37 -0.1 482,271 - BPHYT_RS02090 0.37 +0.9 482,357 - BPHYT_RS02090 0.46 +0.5 482,357 - BPHYT_RS02090 0.46 -0.5 482,510 + BPHYT_RS02090 0.62 +0.0 482,510 + BPHYT_RS02090 0.62 +1.2 482,511 - BPHYT_RS02090 0.62 +0.2 482,514 + BPHYT_RS02090 0.62 +0.9 482,515 - BPHYT_RS02090 0.62 -1.1
Or see this region's nucleotide sequence