Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01080 and BPHYT_RS01085 are separated by 689 nucleotides BPHYT_RS01085 and BPHYT_RS01090 are separated by 293 nucleotides
BPHYT_RS01080: BPHYT_RS01080 - hypothetical protein, at 249,234 to 250,370
_RS01080
BPHYT_RS01085: BPHYT_RS01085 - transposase IS116/IS110/IS902 family protein, at 251,060 to 252,160
_RS01085
BPHYT_RS01090: BPHYT_RS01090 - hypothetical protein, at 252,454 to 252,735
_RS01090
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 250.118 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.274 kb on + strand at 250.274 kb on + strand at 250.274 kb on + strand at 250.334 kb on - strand at 250.334 kb on - strand at 250.336 kb on - strand at 250.643 kb on - strand at 250.684 kb on + strand at 250.685 kb on - strand at 250.731 kb on + strand at 250.751 kb on - strand at 250.898 kb on - strand at 251.049 kb on + strand at 251.105 kb on + strand at 251.105 kb on + strand at 251.105 kb on + strand at 251.106 kb on - strand at 251.215 kb on + strand, within BPHYT_RS01085 at 251.215 kb on + strand, within BPHYT_RS01085 at 251.246 kb on + strand, within BPHYT_RS01085 at 251.247 kb on - strand, within BPHYT_RS01085 at 251.300 kb on + strand, within BPHYT_RS01085 at 251.301 kb on - strand, within BPHYT_RS01085 at 251.608 kb on + strand, within BPHYT_RS01085 at 251.609 kb on - strand, within BPHYT_RS01085 at 251.682 kb on + strand, within BPHYT_RS01085 at 251.682 kb on + strand, within BPHYT_RS01085 at 252.141 kb on + strand at 252.243 kb on - strand at 252.308 kb on + strand at 252.381 kb on - strand at 252.487 kb on - strand, within BPHYT_RS01090 at 252.492 kb on + strand, within BPHYT_RS01090 at 252.597 kb on - strand, within BPHYT_RS01090 at 252.697 kb on - strand, within BPHYT_RS01090 at 252.722 kb on + strand at 252.723 kb on - strand at 252.730 kb on - strand at 252.731 kb on + strand at 252.731 kb on + strand at 252.731 kb on + strand at 252.732 kb on - strand at 252.732 kb on - strand at 253.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 250,118 + BPHYT_RS01080 0.78 -2.9 250,253 + BPHYT_RS01080 0.90 +0.0 250,253 + BPHYT_RS01080 0.90 +4.4 250,253 + BPHYT_RS01080 0.90 -0.2 250,253 + BPHYT_RS01080 0.90 +1.9 250,274 + +0.6 250,274 + -0.8 250,274 + -0.8 250,334 - -1.3 250,334 - +0.5 250,336 - +0.4 250,643 - -0.8 250,684 + -0.1 250,685 - +2.5 250,731 + -0.9 250,751 - +0.5 250,898 - -1.1 251,049 + +0.3 251,105 + -0.8 251,105 + +0.0 251,105 + -0.1 251,106 - +0.0 251,215 + BPHYT_RS01085 0.14 -0.0 251,215 + BPHYT_RS01085 0.14 -0.1 251,246 + BPHYT_RS01085 0.17 +0.8 251,247 - BPHYT_RS01085 0.17 +1.3 251,300 + BPHYT_RS01085 0.22 +3.3 251,301 - BPHYT_RS01085 0.22 +2.1 251,608 + BPHYT_RS01085 0.50 +0.3 251,609 - BPHYT_RS01085 0.50 +0.5 251,682 + BPHYT_RS01085 0.56 +1.2 251,682 + BPHYT_RS01085 0.56 -0.0 252,141 + -0.6 252,243 - -0.0 252,308 + -1.7 252,381 - -1.0 252,487 - BPHYT_RS01090 0.12 +0.2 252,492 + BPHYT_RS01090 0.13 -1.0 252,597 - BPHYT_RS01090 0.51 +0.2 252,697 - BPHYT_RS01090 0.86 -0.0 252,722 + +0.5 252,723 - +1.1 252,730 - -1.4 252,731 + +0.7 252,731 + -0.2 252,731 + -0.1 252,732 - +0.9 252,732 - +0.4 253,099 + +0.5
Or see this region's nucleotide sequence