Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01080 and BPHYT_RS01085 are separated by 689 nucleotides
BPHYT_RS01080: BPHYT_RS01080 - hypothetical protein, at 249,234 to 250,370
_RS01080
BPHYT_RS01085: BPHYT_RS01085 - transposase IS116/IS110/IS902 family protein, at 251,060 to 252,160
_RS01085
Position (kb) 249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 248.287 kb on + strand at 248.288 kb on - strand at 248.392 kb on - strand at 248.742 kb on + strand at 248.742 kb on + strand at 248.801 kb on - strand at 249.022 kb on + strand at 249.023 kb on - strand at 249.146 kb on + strand at 249.202 kb on - strand at 249.262 kb on + strand at 249.263 kb on - strand at 249.344 kb on + strand at 249.374 kb on - strand, within BPHYT_RS01080 at 249.403 kb on + strand, within BPHYT_RS01080 at 249.415 kb on + strand, within BPHYT_RS01080 at 249.416 kb on - strand, within BPHYT_RS01080 at 249.588 kb on + strand, within BPHYT_RS01080 at 249.590 kb on + strand, within BPHYT_RS01080 at 249.634 kb on - strand, within BPHYT_RS01080 at 249.656 kb on - strand, within BPHYT_RS01080 at 249.656 kb on - strand, within BPHYT_RS01080 at 249.687 kb on + strand, within BPHYT_RS01080 at 249.688 kb on - strand, within BPHYT_RS01080 at 249.897 kb on + strand, within BPHYT_RS01080 at 249.898 kb on - strand, within BPHYT_RS01080 at 249.954 kb on + strand, within BPHYT_RS01080 at 249.954 kb on + strand, within BPHYT_RS01080 at 249.998 kb on - strand, within BPHYT_RS01080 at 250.048 kb on - strand, within BPHYT_RS01080 at 250.118 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.253 kb on + strand, within BPHYT_RS01080 at 250.274 kb on + strand at 250.274 kb on + strand at 250.274 kb on + strand at 250.334 kb on - strand at 250.334 kb on - strand at 250.336 kb on - strand at 250.643 kb on - strand at 250.684 kb on + strand at 250.731 kb on + strand at 250.751 kb on - strand at 250.898 kb on - strand at 251.049 kb on + strand at 251.105 kb on + strand at 251.105 kb on + strand at 251.105 kb on + strand at 251.106 kb on - strand at 251.215 kb on + strand, within BPHYT_RS01085 at 251.215 kb on + strand, within BPHYT_RS01085 at 251.246 kb on + strand, within BPHYT_RS01085 at 251.247 kb on - strand, within BPHYT_RS01085 at 251.300 kb on + strand, within BPHYT_RS01085 at 251.301 kb on - strand, within BPHYT_RS01085
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 248,287 + +0.1 248,288 - +0.3 248,392 - +0.2 248,742 + +0.2 248,742 + +0.0 248,801 - +0.6 249,022 + -0.2 249,023 - +1.9 249,146 + +0.8 249,202 - -0.2 249,262 + -0.2 249,263 - -0.3 249,344 + -0.8 249,374 - BPHYT_RS01080 0.12 -0.7 249,403 + BPHYT_RS01080 0.15 +0.6 249,415 + BPHYT_RS01080 0.16 +0.8 249,416 - BPHYT_RS01080 0.16 +0.4 249,588 + BPHYT_RS01080 0.31 -0.1 249,590 + BPHYT_RS01080 0.31 +1.6 249,634 - BPHYT_RS01080 0.35 +0.3 249,656 - BPHYT_RS01080 0.37 +0.2 249,656 - BPHYT_RS01080 0.37 +3.8 249,687 + BPHYT_RS01080 0.40 -1.3 249,688 - BPHYT_RS01080 0.40 +0.4 249,897 + BPHYT_RS01080 0.58 -0.1 249,898 - BPHYT_RS01080 0.58 +0.4 249,954 + BPHYT_RS01080 0.63 +0.3 249,954 + BPHYT_RS01080 0.63 +0.5 249,998 - BPHYT_RS01080 0.67 +0.1 250,048 - BPHYT_RS01080 0.72 +0.3 250,118 + BPHYT_RS01080 0.78 -2.9 250,253 + BPHYT_RS01080 0.90 +0.0 250,253 + BPHYT_RS01080 0.90 +4.4 250,253 + BPHYT_RS01080 0.90 -0.2 250,253 + BPHYT_RS01080 0.90 +1.9 250,274 + +0.6 250,274 + -0.8 250,274 + -0.8 250,334 - -1.3 250,334 - +0.5 250,336 - +0.4 250,643 - -0.8 250,684 + -0.1 250,731 + -0.9 250,751 - +0.5 250,898 - -1.1 251,049 + +0.3 251,105 + -0.8 251,105 + +0.0 251,105 + -0.1 251,106 - +0.0 251,215 + BPHYT_RS01085 0.14 -0.0 251,215 + BPHYT_RS01085 0.14 -0.1 251,246 + BPHYT_RS01085 0.17 +0.8 251,247 - BPHYT_RS01085 0.17 +1.3 251,300 + BPHYT_RS01085 0.22 +3.3 251,301 - BPHYT_RS01085 0.22 +2.1
Or see this region's nucleotide sequence