Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00755 and BPHYT_RS00760 overlap by 8 nucleotides BPHYT_RS00760 and BPHYT_RS00765 overlap by 4 nucleotides BPHYT_RS00765 and BPHYT_RS00770 are separated by 37 nucleotides BPHYT_RS00770 and BPHYT_RS00775 are separated by 13 nucleotides BPHYT_RS00775 and BPHYT_RS00780 are separated by 19 nucleotides
BPHYT_RS00755: BPHYT_RS00755 - cobyric acid synthase CobQ, at 172,963 to 173,835
_RS00755
BPHYT_RS00760: BPHYT_RS00760 - hypothetical protein, at 173,828 to 174,412
_RS00760
BPHYT_RS00765: BPHYT_RS00765 - lytic transglycosylase, at 174,409 to 175,086
_RS00765
BPHYT_RS00770: BPHYT_RS00770 - conjugal transfer protein TraC, at 175,124 to 175,465
_RS00770
BPHYT_RS00775: BPHYT_RS00775 - conjugal transfer protein TraD, at 175,479 to 175,811
_RS00775
BPHYT_RS00780: BPHYT_RS00780 - type IV secretion protein VirB4, at 175,831 to 178,281
_RS00780
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1 at 173.446 kb on + strand, within BPHYT_RS00755 at 173.446 kb on + strand, within BPHYT_RS00755 at 173.447 kb on - strand, within BPHYT_RS00755 at 173.447 kb on - strand, within BPHYT_RS00755 at 173.643 kb on + strand, within BPHYT_RS00755 at 173.644 kb on - strand, within BPHYT_RS00755 at 174.023 kb on + strand, within BPHYT_RS00760 at 174.254 kb on + strand, within BPHYT_RS00760 at 174.254 kb on + strand, within BPHYT_RS00760 at 174.309 kb on - strand, within BPHYT_RS00760 at 174.336 kb on - strand, within BPHYT_RS00760 at 174.336 kb on - strand, within BPHYT_RS00760 at 174.515 kb on - strand, within BPHYT_RS00765 at 174.613 kb on + strand, within BPHYT_RS00765 at 174.614 kb on - strand, within BPHYT_RS00765 at 174.635 kb on + strand, within BPHYT_RS00765 at 174.806 kb on - strand, within BPHYT_RS00765 at 174.806 kb on - strand, within BPHYT_RS00765 at 174.935 kb on + strand, within BPHYT_RS00765 at 174.935 kb on + strand, within BPHYT_RS00765 at 174.936 kb on - strand, within BPHYT_RS00765 at 175.306 kb on + strand at 175.398 kb on + strand, within BPHYT_RS00770 at 175.780 kb on - strand at 175.841 kb on + strand at 175.859 kb on + strand at 175.927 kb on + strand at 175.927 kb on + strand at 175.928 kb on - strand at 175.928 kb on - strand at 175.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 173,446 + BPHYT_RS00755 0.55 -0.9 173,446 + BPHYT_RS00755 0.55 -0.6 173,447 - BPHYT_RS00755 0.55 +0.3 173,447 - BPHYT_RS00755 0.55 +0.0 173,643 + BPHYT_RS00755 0.78 -0.8 173,644 - BPHYT_RS00755 0.78 -0.8 174,023 + BPHYT_RS00760 0.33 -0.1 174,254 + BPHYT_RS00760 0.73 +0.7 174,254 + BPHYT_RS00760 0.73 -0.5 174,309 - BPHYT_RS00760 0.82 -0.2 174,336 - BPHYT_RS00760 0.87 -0.0 174,336 - BPHYT_RS00760 0.87 +0.3 174,515 - BPHYT_RS00765 0.16 +0.8 174,613 + BPHYT_RS00765 0.30 +0.1 174,614 - BPHYT_RS00765 0.30 +1.5 174,635 + BPHYT_RS00765 0.33 +0.3 174,806 - BPHYT_RS00765 0.59 -0.0 174,806 - BPHYT_RS00765 0.59 +0.4 174,935 + BPHYT_RS00765 0.78 +0.6 174,935 + BPHYT_RS00765 0.78 +1.3 174,936 - BPHYT_RS00765 0.78 +0.1 175,306 + -1.8 175,398 + BPHYT_RS00770 0.80 +0.3 175,780 - +0.3 175,841 + -0.7 175,859 + +0.7 175,927 + +0.5 175,927 + +0.1 175,928 - +0.3 175,928 - -0.3 175,928 - -0.7
Or see this region's nucleotide sequence