Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27065 and BWI76_RS27070 are separated by 101 nucleotides BWI76_RS27070 and BWI76_RS27075 are separated by 118 nucleotides BWI76_RS27075 and BWI76_RS27080 are separated by 217 nucleotides
BWI76_RS27065: BWI76_RS27065 - valine--pyruvate transaminase, at 5,616,666 to 5,617,925
_RS27065
BWI76_RS27070: BWI76_RS27070 - 4Fe-4S ferredoxin, at 5,618,027 to 5,618,515
_RS27070
BWI76_RS27075: BWI76_RS27075 - IclR family transcriptional regulator, at 5,618,634 to 5,619,452
_RS27075
BWI76_RS27080: BWI76_RS27080 - 3-dehydro-L-gulonate 2-dehydrogenase, at 5,619,670 to 5,620,668
_RS27080
Position (kb) 5618
5619
5620 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5617.696 kb on + strand, within BWI76_RS27065 at 5617.697 kb on + strand, within BWI76_RS27065 at 5617.705 kb on - strand, within BWI76_RS27065 at 5617.763 kb on - strand, within BWI76_RS27065 at 5617.903 kb on + strand at 5617.913 kb on + strand at 5617.969 kb on - strand at 5618.091 kb on + strand, within BWI76_RS27070 at 5618.104 kb on - strand at 5618.185 kb on + strand, within BWI76_RS27070 at 5618.224 kb on + strand, within BWI76_RS27070 at 5618.234 kb on - strand, within BWI76_RS27070 at 5618.255 kb on + strand, within BWI76_RS27070 at 5618.413 kb on + strand, within BWI76_RS27070 at 5618.413 kb on + strand, within BWI76_RS27070 at 5618.421 kb on - strand, within BWI76_RS27070 at 5618.423 kb on + strand, within BWI76_RS27070 at 5618.431 kb on - strand, within BWI76_RS27070 at 5618.431 kb on - strand, within BWI76_RS27070 at 5618.431 kb on - strand, within BWI76_RS27070 at 5618.638 kb on + strand at 5618.800 kb on + strand, within BWI76_RS27075 at 5618.906 kb on - strand, within BWI76_RS27075 at 5618.995 kb on + strand, within BWI76_RS27075 at 5619.003 kb on + strand, within BWI76_RS27075 at 5619.100 kb on - strand, within BWI76_RS27075 at 5619.196 kb on - strand, within BWI76_RS27075 at 5619.264 kb on + strand, within BWI76_RS27075 at 5619.392 kb on + strand at 5619.790 kb on - strand, within BWI76_RS27080 at 5619.793 kb on + strand, within BWI76_RS27080 at 5619.837 kb on + strand, within BWI76_RS27080 at 5619.974 kb on + strand, within BWI76_RS27080 at 5619.990 kb on - strand, within BWI76_RS27080 at 5619.991 kb on - strand, within BWI76_RS27080 at 5620.042 kb on - strand, within BWI76_RS27080 at 5620.112 kb on + strand, within BWI76_RS27080 at 5620.215 kb on + strand, within BWI76_RS27080 at 5620.223 kb on - strand, within BWI76_RS27080 at 5620.326 kb on + strand, within BWI76_RS27080 at 5620.337 kb on + strand, within BWI76_RS27080 at 5620.386 kb on + strand, within BWI76_RS27080 at 5620.389 kb on + strand, within BWI76_RS27080
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 5,617,696 + BWI76_RS27065 0.82 -2.0 5,617,697 + BWI76_RS27065 0.82 -2.7 5,617,705 - BWI76_RS27065 0.82 +0.7 5,617,763 - BWI76_RS27065 0.87 +1.0 5,617,903 + +1.2 5,617,913 + +0.4 5,617,969 - +1.4 5,618,091 + BWI76_RS27070 0.13 -1.3 5,618,104 - +1.0 5,618,185 + BWI76_RS27070 0.32 +0.3 5,618,224 + BWI76_RS27070 0.40 -0.4 5,618,234 - BWI76_RS27070 0.42 -1.4 5,618,255 + BWI76_RS27070 0.47 -1.3 5,618,413 + BWI76_RS27070 0.79 -4.1 5,618,413 + BWI76_RS27070 0.79 -2.4 5,618,421 - BWI76_RS27070 0.81 -0.4 5,618,423 + BWI76_RS27070 0.81 +0.0 5,618,431 - BWI76_RS27070 0.83 -0.0 5,618,431 - BWI76_RS27070 0.83 +0.2 5,618,431 - BWI76_RS27070 0.83 -1.8 5,618,638 + +0.0 5,618,800 + BWI76_RS27075 0.20 -0.8 5,618,906 - BWI76_RS27075 0.33 -1.1 5,618,995 + BWI76_RS27075 0.44 -2.2 5,619,003 + BWI76_RS27075 0.45 -2.2 5,619,100 - BWI76_RS27075 0.57 -0.6 5,619,196 - BWI76_RS27075 0.69 -0.4 5,619,264 + BWI76_RS27075 0.77 +0.0 5,619,392 + -1.4 5,619,790 - BWI76_RS27080 0.12 +1.3 5,619,793 + BWI76_RS27080 0.12 -3.0 5,619,837 + BWI76_RS27080 0.17 -1.0 5,619,974 + BWI76_RS27080 0.30 +0.3 5,619,990 - BWI76_RS27080 0.32 +0.2 5,619,991 - BWI76_RS27080 0.32 -0.6 5,620,042 - BWI76_RS27080 0.37 -0.6 5,620,112 + BWI76_RS27080 0.44 +1.0 5,620,215 + BWI76_RS27080 0.55 +0.2 5,620,223 - BWI76_RS27080 0.55 -0.2 5,620,326 + BWI76_RS27080 0.66 -1.5 5,620,337 + BWI76_RS27080 0.67 -1.0 5,620,386 + BWI76_RS27080 0.72 -2.0 5,620,389 + BWI76_RS27080 0.72 +0.3
Or see this region's nucleotide sequence