Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24265 and BWI76_RS24270 are separated by 121 nucleotides BWI76_RS24270 and BWI76_RS24275 are separated by 142 nucleotides BWI76_RS24275 and BWI76_RS24280 are separated by 6 nucleotides
BWI76_RS24265: BWI76_RS24265 - dienelactone hydrolase, at 5,056,261 to 5,057,148
_RS24265
BWI76_RS24270: BWI76_RS24270 - membrane protein, at 5,057,270 to 5,057,764
_RS24270
BWI76_RS24275: BWI76_RS24275 - biopolymer transport protein ExbD, at 5,057,907 to 5,058,332
_RS24275
BWI76_RS24280: BWI76_RS24280 - biopolymer transporter ExbB, at 5,058,339 to 5,059,070
_RS24280
Position (kb) 5057
5058 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5056.424 kb on - strand, within BWI76_RS24265 at 5056.535 kb on + strand, within BWI76_RS24265 at 5056.744 kb on + strand, within BWI76_RS24265 at 5056.965 kb on + strand, within BWI76_RS24265 at 5057.008 kb on - strand, within BWI76_RS24265 at 5057.306 kb on - strand at 5057.357 kb on - strand, within BWI76_RS24270 at 5057.554 kb on + strand, within BWI76_RS24270 at 5057.598 kb on + strand, within BWI76_RS24270 at 5057.690 kb on - strand, within BWI76_RS24270 at 5057.794 kb on + strand at 5057.794 kb on + strand at 5057.872 kb on + strand at 5057.879 kb on - strand at 5057.974 kb on + strand, within BWI76_RS24275 at 5057.988 kb on - strand, within BWI76_RS24275 at 5058.135 kb on - strand, within BWI76_RS24275 at 5058.382 kb on - strand at 5058.598 kb on - strand, within BWI76_RS24280 at 5058.746 kb on + strand, within BWI76_RS24280
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 5,056,424 - BWI76_RS24265 0.18 -1.7 5,056,535 + BWI76_RS24265 0.31 +0.4 5,056,744 + BWI76_RS24265 0.54 -0.2 5,056,965 + BWI76_RS24265 0.79 +0.1 5,057,008 - BWI76_RS24265 0.84 -0.5 5,057,306 - +0.6 5,057,357 - BWI76_RS24270 0.18 +0.5 5,057,554 + BWI76_RS24270 0.57 -2.5 5,057,598 + BWI76_RS24270 0.66 -2.7 5,057,690 - BWI76_RS24270 0.85 -3.7 5,057,794 + +1.4 5,057,794 + -1.0 5,057,872 + -0.0 5,057,879 - -3.4 5,057,974 + BWI76_RS24275 0.16 -0.8 5,057,988 - BWI76_RS24275 0.19 -0.0 5,058,135 - BWI76_RS24275 0.54 -1.4 5,058,382 - +0.2 5,058,598 - BWI76_RS24280 0.35 -1.0 5,058,746 + BWI76_RS24280 0.56 +2.6
Or see this region's nucleotide sequence