Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23555

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23550 and BWI76_RS23555 are separated by 464 nucleotidesBWI76_RS23555 and BWI76_RS23560 are separated by 72 nucleotidesBWI76_RS23560 and BWI76_RS23565 are separated by 35 nucleotides BWI76_RS23550: BWI76_RS23550 - tyrosine recombinase, at 4,911,905 to 4,912,531 _RS23550 BWI76_RS23555: BWI76_RS23555 - type 1 major fimbrial subunit precursor, at 4,912,996 to 4,913,541 _RS23555 BWI76_RS23560: BWI76_RS23560 - hypothetical protein, at 4,913,614 to 4,914,153 _RS23560 BWI76_RS23565: BWI76_RS23565 - molecular chaperone FimC, at 4,914,189 to 4,914,914 _RS23565 Position (kb) 4912 4913 4914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.001 kb on - strand, within BWI76_RS23550at 4912.044 kb on + strand, within BWI76_RS23550at 4912.059 kb on + strand, within BWI76_RS23550at 4912.059 kb on + strand, within BWI76_RS23550at 4912.059 kb on + strand, within BWI76_RS23550at 4912.059 kb on + strand, within BWI76_RS23550at 4912.059 kb on + strand, within BWI76_RS23550at 4912.067 kb on - strand, within BWI76_RS23550at 4912.070 kb on + strand, within BWI76_RS23550at 4912.108 kb on + strand, within BWI76_RS23550at 4912.116 kb on - strand, within BWI76_RS23550at 4912.124 kb on - strand, within BWI76_RS23550at 4912.132 kb on - strand, within BWI76_RS23550at 4912.141 kb on + strand, within BWI76_RS23550at 4912.148 kb on + strand, within BWI76_RS23550at 4912.149 kb on - strand, within BWI76_RS23550at 4912.168 kb on + strand, within BWI76_RS23550at 4912.168 kb on + strand, within BWI76_RS23550at 4912.174 kb on - strand, within BWI76_RS23550at 4912.176 kb on - strand, within BWI76_RS23550at 4912.178 kb on + strand, within BWI76_RS23550at 4912.178 kb on + strand, within BWI76_RS23550at 4912.178 kb on + strand, within BWI76_RS23550at 4912.299 kb on + strand, within BWI76_RS23550at 4912.340 kb on - strand, within BWI76_RS23550at 4912.340 kb on - strand, within BWI76_RS23550at 4912.342 kb on + strand, within BWI76_RS23550at 4912.422 kb on - strand, within BWI76_RS23550at 4912.429 kb on - strand, within BWI76_RS23550at 4912.615 kb on - strandat 4912.615 kb on - strandat 4912.720 kb on + strandat 4913.046 kb on - strandat 4913.119 kb on + strand, within BWI76_RS23555at 4913.172 kb on - strand, within BWI76_RS23555at 4913.320 kb on + strand, within BWI76_RS23555at 4913.331 kb on - strand, within BWI76_RS23555at 4913.510 kb on - strandat 4913.627 kb on + strandat 4913.966 kb on + strand, within BWI76_RS23560at 4914.083 kb on + strand, within BWI76_RS23560at 4914.292 kb on + strand, within BWI76_RS23565at 4914.421 kb on + strand, within BWI76_RS23565at 4914.456 kb on - strand, within BWI76_RS23565

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
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4,912,001 - BWI76_RS23550 0.15 -0.5
4,912,001 - BWI76_RS23550 0.15 +1.5
4,912,001 - BWI76_RS23550 0.15 -1.7
4,912,001 - BWI76_RS23550 0.15 -2.6
4,912,001 - BWI76_RS23550 0.15 -1.7
4,912,001 - BWI76_RS23550 0.15 -2.4
4,912,001 - BWI76_RS23550 0.15 +0.0
4,912,001 - BWI76_RS23550 0.15 -0.7
4,912,001 - BWI76_RS23550 0.15 -2.3
4,912,001 - BWI76_RS23550 0.15 +1.8
4,912,001 - BWI76_RS23550 0.15 +0.1
4,912,001 - BWI76_RS23550 0.15 -3.1
4,912,001 - BWI76_RS23550 0.15 -0.1
4,912,001 - BWI76_RS23550 0.15 +0.6
4,912,001 - BWI76_RS23550 0.15 -0.1
4,912,001 - BWI76_RS23550 0.15 -1.9
4,912,001 - BWI76_RS23550 0.15 -1.7
4,912,001 - BWI76_RS23550 0.15 +0.0
4,912,001 - BWI76_RS23550 0.15 +0.4
4,912,001 - BWI76_RS23550 0.15 +0.4
4,912,001 - BWI76_RS23550 0.15 +1.2
4,912,001 - BWI76_RS23550 0.15 +1.3
4,912,001 - BWI76_RS23550 0.15 -2.4
4,912,001 - BWI76_RS23550 0.15 -0.9
4,912,001 - BWI76_RS23550 0.15 -1.5
4,912,001 - BWI76_RS23550 0.15 +0.9
4,912,001 - BWI76_RS23550 0.15 +0.5
4,912,001 - BWI76_RS23550 0.15 -0.1
4,912,001 - BWI76_RS23550 0.15 -3.4
4,912,001 - BWI76_RS23550 0.15 -0.1
4,912,001 - BWI76_RS23550 0.15 -2.1
4,912,001 - BWI76_RS23550 0.15 -0.4
4,912,001 - BWI76_RS23550 0.15 -0.2
4,912,001 - BWI76_RS23550 0.15 +0.6
4,912,001 - BWI76_RS23550 0.15 -1.4
4,912,001 - BWI76_RS23550 0.15 -2.3
4,912,001 - BWI76_RS23550 0.15 +0.7
4,912,001 - BWI76_RS23550 0.15 -0.1
4,912,001 - BWI76_RS23550 0.15 -0.7
4,912,001 - BWI76_RS23550 0.15 +0.1
4,912,001 - BWI76_RS23550 0.15 -0.3
4,912,001 - BWI76_RS23550 0.15 -2.6
4,912,001 - BWI76_RS23550 0.15 +0.3
4,912,001 - BWI76_RS23550 0.15 -0.5
4,912,001 - BWI76_RS23550 0.15 -2.1
4,912,001 - BWI76_RS23550 0.15 +0.9
4,912,001 - BWI76_RS23550 0.15 +0.5
4,912,001 - BWI76_RS23550 0.15 +0.9
4,912,001 - BWI76_RS23550 0.15 -0.9
4,912,001 - BWI76_RS23550 0.15 -1.1
4,912,044 + BWI76_RS23550 0.22 +0.1
4,912,059 + BWI76_RS23550 0.25 +0.3
4,912,059 + BWI76_RS23550 0.25 +0.6
4,912,059 + BWI76_RS23550 0.25 +0.3
4,912,059 + BWI76_RS23550 0.25 -0.4
4,912,059 + BWI76_RS23550 0.25 +0.5
4,912,067 - BWI76_RS23550 0.26 -0.7
4,912,070 + BWI76_RS23550 0.26 -1.1
4,912,108 + BWI76_RS23550 0.32 -0.1
4,912,116 - BWI76_RS23550 0.34 +1.2
4,912,124 - BWI76_RS23550 0.35 -3.2
4,912,132 - BWI76_RS23550 0.36 -0.7
4,912,141 + BWI76_RS23550 0.38 -0.0
4,912,148 + BWI76_RS23550 0.39 +1.2
4,912,149 - BWI76_RS23550 0.39 -0.1
4,912,168 + BWI76_RS23550 0.42 -0.6
4,912,168 + BWI76_RS23550 0.42 -0.1
4,912,174 - BWI76_RS23550 0.43 +0.2
4,912,176 - BWI76_RS23550 0.43 +0.6
4,912,178 + BWI76_RS23550 0.44 +0.0
4,912,178 + BWI76_RS23550 0.44 +1.2
4,912,178 + BWI76_RS23550 0.44 -1.9
4,912,299 + BWI76_RS23550 0.63 -0.6
4,912,340 - BWI76_RS23550 0.69 -1.1
4,912,340 - BWI76_RS23550 0.69 -0.1
4,912,342 + BWI76_RS23550 0.70 +0.6
4,912,422 - BWI76_RS23550 0.82 +1.2
4,912,429 - BWI76_RS23550 0.84 +0.1
4,912,615 - +0.5
4,912,615 - -2.9
4,912,720 + -0.4
4,913,046 - -0.4
4,913,119 + BWI76_RS23555 0.23 +1.0
4,913,172 - BWI76_RS23555 0.32 +1.5
4,913,320 + BWI76_RS23555 0.59 -0.7
4,913,331 - BWI76_RS23555 0.61 +2.2
4,913,510 - +0.6
4,913,627 + -1.2
4,913,966 + BWI76_RS23560 0.65 +0.2
4,914,083 + BWI76_RS23560 0.87 -0.9
4,914,292 + BWI76_RS23565 0.14 +1.3
4,914,421 + BWI76_RS23565 0.32 -0.0
4,914,456 - BWI76_RS23565 0.37 -1.6

Or see this region's nucleotide sequence