Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20615

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20610 and BWI76_RS20615 are separated by 89 nucleotidesBWI76_RS20615 and BWI76_RS20620 overlap by 4 nucleotidesBWI76_RS20620 and BWI76_RS20625 overlap by 8 nucleotides BWI76_RS20610: BWI76_RS20610 - LysR family transcriptional regulator, at 4,312,740 to 4,313,666 _RS20610 BWI76_RS20615: BWI76_RS20615 - sodium symporter, at 4,313,756 to 4,314,754 _RS20615 BWI76_RS20620: BWI76_RS20620 - negative regulator, at 4,314,751 to 4,314,969 _RS20620 BWI76_RS20625: BWI76_RS20625 - DNA ligase (NAD(+)) LigA, at 4,314,962 to 4,316,986 _RS20625 Position (kb) 4313 4314 4315Strain fitness (log2 ratio) -3 -2 -1 0 1at 4313.394 kb on - strand, within BWI76_RS20610at 4313.416 kb on + strand, within BWI76_RS20610at 4313.476 kb on + strand, within BWI76_RS20610at 4313.493 kb on - strand, within BWI76_RS20610at 4313.530 kb on - strand, within BWI76_RS20610at 4313.582 kb on + strandat 4313.590 kb on - strandat 4313.602 kb on - strandat 4313.924 kb on - strand, within BWI76_RS20615at 4314.152 kb on + strand, within BWI76_RS20615at 4314.227 kb on + strand, within BWI76_RS20615at 4314.234 kb on + strand, within BWI76_RS20615at 4314.242 kb on - strand, within BWI76_RS20615at 4314.604 kb on + strand, within BWI76_RS20615at 4314.673 kb on - strandat 4314.769 kb on - strandat 4314.769 kb on - strandat 4314.784 kb on + strand, within BWI76_RS20620

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
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4,313,394 - BWI76_RS20610 0.71 -0.7
4,313,416 + BWI76_RS20610 0.73 +0.4
4,313,476 + BWI76_RS20610 0.79 -1.0
4,313,493 - BWI76_RS20610 0.81 -0.1
4,313,530 - BWI76_RS20610 0.85 -0.4
4,313,582 + +1.0
4,313,590 - +1.2
4,313,602 - -0.9
4,313,924 - BWI76_RS20615 0.17 -3.1
4,314,152 + BWI76_RS20615 0.40 +0.5
4,314,227 + BWI76_RS20615 0.47 -3.0
4,314,234 + BWI76_RS20615 0.48 -1.6
4,314,242 - BWI76_RS20615 0.49 -1.3
4,314,604 + BWI76_RS20615 0.85 -0.6
4,314,673 - +0.2
4,314,769 - -1.6
4,314,769 - +0.9
4,314,784 + BWI76_RS20620 0.15 +0.1

Or see this region's nucleotide sequence