Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19430 and BWI76_RS19435 are separated by 14 nucleotides BWI76_RS19435 and BWI76_RS19440 are separated by 77 nucleotides
BWI76_RS19430: BWI76_RS19430 - MolR family transcriptional regulator, at 4,053,710 to 4,057,426
_RS19430
BWI76_RS19435: BWI76_RS19435 - hypothetical protein, at 4,057,441 to 4,061,037
_RS19435
BWI76_RS19440: BWI76_RS19440 - putative transporter subunit, at 4,061,115 to 4,062,203
_RS19440
Position (kb)
4057
4058
4059
4060
4061
4062 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4057.179 kb on + strand at 4057.272 kb on + strand at 4057.372 kb on + strand at 4057.578 kb on - strand at 4057.760 kb on + strand at 4057.768 kb on - strand at 4057.788 kb on + strand at 4058.940 kb on - strand, within BWI76_RS19435 at 4059.321 kb on + strand, within BWI76_RS19435 at 4059.541 kb on + strand, within BWI76_RS19435 at 4060.093 kb on - strand, within BWI76_RS19435 at 4060.153 kb on - strand, within BWI76_RS19435 at 4060.291 kb on + strand, within BWI76_RS19435 at 4060.326 kb on - strand, within BWI76_RS19435 at 4060.521 kb on + strand, within BWI76_RS19435 at 4061.256 kb on - strand, within BWI76_RS19440 at 4061.405 kb on - strand, within BWI76_RS19440 at 4061.551 kb on - strand, within BWI76_RS19440 at 4061.682 kb on + strand, within BWI76_RS19440 at 4061.860 kb on + strand, within BWI76_RS19440
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 4,057,179 + -1.7 4,057,272 + -0.2 4,057,372 + -0.4 4,057,578 - +1.3 4,057,760 + +1.0 4,057,768 - +0.9 4,057,788 + +0.9 4,058,940 - BWI76_RS19435 0.42 +0.5 4,059,321 + BWI76_RS19435 0.52 +1.6 4,059,541 + BWI76_RS19435 0.58 -0.0 4,060,093 - BWI76_RS19435 0.74 -0.5 4,060,153 - BWI76_RS19435 0.75 -1.4 4,060,291 + BWI76_RS19435 0.79 -2.7 4,060,326 - BWI76_RS19435 0.80 -0.0 4,060,521 + BWI76_RS19435 0.86 +0.3 4,061,256 - BWI76_RS19440 0.13 -0.5 4,061,405 - BWI76_RS19440 0.27 -0.7 4,061,551 - BWI76_RS19440 0.40 +1.1 4,061,682 + BWI76_RS19440 0.52 +0.4 4,061,860 + BWI76_RS19440 0.68 +1.9
Or see this region's nucleotide sequence