Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15265 and BWI76_RS15270 are separated by 142 nucleotides BWI76_RS15270 and BWI76_RS15275 are separated by 9 nucleotides
BWI76_RS15265: BWI76_RS15265 - hypothetical protein, at 3,198,817 to 3,200,097
_RS15265
BWI76_RS15270: BWI76_RS15270 - phenazine biosynthesis protein PhzF family, at 3,200,240 to 3,201,028
_RS15270
BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829
_RS15275
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3199.362 kb on + strand, within BWI76_RS15265 at 3199.771 kb on + strand, within BWI76_RS15265 at 3199.810 kb on + strand, within BWI76_RS15265 at 3199.825 kb on + strand, within BWI76_RS15265 at 3199.860 kb on - strand, within BWI76_RS15265 at 3199.892 kb on + strand, within BWI76_RS15265 at 3199.906 kb on - strand, within BWI76_RS15265 at 3200.165 kb on + strand at 3200.241 kb on - strand at 3200.246 kb on - strand at 3200.246 kb on - strand at 3200.653 kb on + strand, within BWI76_RS15270 at 3200.875 kb on + strand, within BWI76_RS15270 at 3200.896 kb on + strand, within BWI76_RS15270 at 3201.277 kb on - strand, within BWI76_RS15275 at 3201.401 kb on - strand, within BWI76_RS15275 at 3201.406 kb on - strand, within BWI76_RS15275 at 3201.664 kb on + strand, within BWI76_RS15275 at 3201.839 kb on - strand at 3201.924 kb on + strand at 3202.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 3,199,362 + BWI76_RS15265 0.43 +2.0 3,199,771 + BWI76_RS15265 0.74 +0.3 3,199,810 + BWI76_RS15265 0.78 +1.3 3,199,825 + BWI76_RS15265 0.79 -3.0 3,199,860 - BWI76_RS15265 0.81 -0.3 3,199,892 + BWI76_RS15265 0.84 +1.4 3,199,906 - BWI76_RS15265 0.85 +1.5 3,200,165 + +1.0 3,200,241 - -0.9 3,200,246 - -2.9 3,200,246 - +0.9 3,200,653 + BWI76_RS15270 0.52 -0.7 3,200,875 + BWI76_RS15270 0.80 -2.0 3,200,896 + BWI76_RS15270 0.83 +0.1 3,201,277 - BWI76_RS15275 0.30 +1.1 3,201,401 - BWI76_RS15275 0.46 +0.8 3,201,406 - BWI76_RS15275 0.46 -2.6 3,201,664 + BWI76_RS15275 0.79 -0.2 3,201,839 - -0.2 3,201,924 + -1.3 3,202,023 + -1.6
Or see this region's nucleotide sequence