Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14630 and BWI76_RS14635 are separated by 40 nucleotides BWI76_RS14635 and BWI76_RS14640 are separated by 159 nucleotides BWI76_RS14640 and BWI76_RS14645 overlap by 26 nucleotides
BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041
_RS14630
BWI76_RS14635: BWI76_RS14635 - receptor, at 3,072,082 to 3,073,140
_RS14635
BWI76_RS14640: BWI76_RS14640 - DNA-binding response regulator, at 3,073,300 to 3,073,887
_RS14640
BWI76_RS14645: BWI76_RS14645 - sensor histidine kinase, at 3,073,862 to 3,075,619
_RS14645
Position (kb)
3072
3073
3074 Strain fitness (log2 ratio)
-2
-1
0
1 at 3071.089 kb on - strand, within BWI76_RS14630 at 3071.204 kb on + strand, within BWI76_RS14630 at 3071.212 kb on - strand, within BWI76_RS14630 at 3071.262 kb on + strand, within BWI76_RS14630 at 3071.403 kb on + strand, within BWI76_RS14630 at 3071.574 kb on - strand, within BWI76_RS14630 at 3071.756 kb on + strand, within BWI76_RS14630 at 3071.785 kb on - strand, within BWI76_RS14630 at 3071.817 kb on + strand, within BWI76_RS14630 at 3071.876 kb on + strand at 3072.299 kb on + strand, within BWI76_RS14635 at 3072.307 kb on - strand, within BWI76_RS14635 at 3072.312 kb on - strand, within BWI76_RS14635 at 3072.422 kb on - strand, within BWI76_RS14635 at 3072.427 kb on - strand, within BWI76_RS14635 at 3072.432 kb on - strand, within BWI76_RS14635 at 3072.547 kb on + strand, within BWI76_RS14635 at 3072.547 kb on - strand, within BWI76_RS14635 at 3072.640 kb on - strand, within BWI76_RS14635 at 3072.643 kb on + strand, within BWI76_RS14635 at 3072.743 kb on + strand, within BWI76_RS14635 at 3072.770 kb on + strand, within BWI76_RS14635 at 3073.115 kb on + strand at 3073.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 3,071,089 - BWI76_RS14630 0.52 +0.9 3,071,204 + BWI76_RS14630 0.57 -2.7 3,071,212 - BWI76_RS14630 0.58 -0.3 3,071,262 + BWI76_RS14630 0.60 +0.4 3,071,403 + BWI76_RS14630 0.67 -0.1 3,071,574 - BWI76_RS14630 0.76 +0.5 3,071,756 + BWI76_RS14630 0.85 +0.3 3,071,785 - BWI76_RS14630 0.87 -0.3 3,071,817 + BWI76_RS14630 0.89 -0.3 3,071,876 + -1.1 3,072,299 + BWI76_RS14635 0.20 -0.7 3,072,307 - BWI76_RS14635 0.21 -0.3 3,072,312 - BWI76_RS14635 0.22 -1.9 3,072,422 - BWI76_RS14635 0.32 -0.1 3,072,427 - BWI76_RS14635 0.33 +0.2 3,072,432 - BWI76_RS14635 0.33 -0.7 3,072,547 + BWI76_RS14635 0.44 -1.1 3,072,547 - BWI76_RS14635 0.44 +0.9 3,072,640 - BWI76_RS14635 0.53 -0.6 3,072,643 + BWI76_RS14635 0.53 -0.5 3,072,743 + BWI76_RS14635 0.62 -2.1 3,072,770 + BWI76_RS14635 0.65 +0.0 3,073,115 + -0.1 3,073,296 - +0.5
Or see this region's nucleotide sequence