Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04305 and BWI76_RS04310 are separated by 327 nucleotides BWI76_RS04310 and BWI76_RS04315 are separated by 505 nucleotides
BWI76_RS04305: BWI76_RS04305 - molecular chaperone DnaJ, at 887,083 to 888,219
_RS04305
BWI76_RS04310: BWI76_RS04310 - hypothetical protein, at 888,547 to 888,726
_RS04310
BWI76_RS04315: BWI76_RS04315 - Na+/H+ antiporter NhaA, at 889,232 to 890,407
_RS04315
Position (kb) 888
889 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 888.082 kb on + strand, within BWI76_RS04305 at 888.108 kb on + strand at 888.108 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.128 kb on + strand at 888.136 kb on - strand at 888.145 kb on + strand at 888.146 kb on - strand at 888.148 kb on + strand at 888.153 kb on + strand at 888.153 kb on + strand at 888.158 kb on - strand at 888.166 kb on - strand at 888.205 kb on + strand at 888.207 kb on + strand at 888.375 kb on + strand at 888.395 kb on + strand at 888.395 kb on + strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.438 kb on - strand at 888.438 kb on - strand at 888.547 kb on - strand at 888.547 kb on - strand at 888.547 kb on - strand at 888.574 kb on - strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.645 kb on - strand, within BWI76_RS04310 at 888.647 kb on + strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.689 kb on + strand, within BWI76_RS04310 at 888.689 kb on + strand, within BWI76_RS04310 at 888.707 kb on - strand, within BWI76_RS04310 at 888.707 kb on - strand, within BWI76_RS04310 at 888.734 kb on + strand at 888.757 kb on - strand at 888.792 kb on + strand at 888.810 kb on + strand at 888.811 kb on - strand at 888.818 kb on - strand at 888.841 kb on + strand at 888.841 kb on + strand at 888.849 kb on - strand at 888.849 kb on - strand at 888.849 kb on - strand at 888.854 kb on - strand at 888.854 kb on - strand at 888.856 kb on - strand at 888.950 kb on + strand at 888.950 kb on + strand at 889.089 kb on + strand at 889.303 kb on + strand at 889.315 kb on + strand at 889.330 kb on + strand at 889.370 kb on - strand, within BWI76_RS04315 at 889.466 kb on - strand, within BWI76_RS04315 at 889.508 kb on - strand, within BWI76_RS04315 at 889.508 kb on - strand, within BWI76_RS04315 at 889.603 kb on + strand, within BWI76_RS04315 at 889.655 kb on + strand, within BWI76_RS04315
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 888,082 + BWI76_RS04305 0.88 -3.6 888,108 + -3.1 888,108 + -4.1 888,128 + -0.9 888,128 + -1.9 888,128 + -3.7 888,128 + +1.6 888,128 + -3.1 888,128 + -0.1 888,136 - -1.3 888,145 + +0.4 888,146 - -1.8 888,148 + -2.0 888,153 + +0.1 888,153 + -0.2 888,158 - -2.7 888,166 - -0.6 888,205 + -1.6 888,207 + +0.0 888,375 + +0.0 888,395 + +1.0 888,395 + -0.6 888,403 - +1.7 888,403 - +0.5 888,403 - +1.0 888,403 - -0.1 888,403 - +0.6 888,403 - +2.0 888,438 - -3.1 888,438 - -0.1 888,547 - +1.4 888,547 - -1.2 888,547 - +0.2 888,574 - BWI76_RS04310 0.15 +1.5 888,642 + BWI76_RS04310 0.53 -0.4 888,642 + BWI76_RS04310 0.53 +0.7 888,642 + BWI76_RS04310 0.53 -0.6 888,642 + BWI76_RS04310 0.53 +0.9 888,642 + BWI76_RS04310 0.53 -1.8 888,645 - BWI76_RS04310 0.54 -2.1 888,647 + BWI76_RS04310 0.56 -0.2 888,650 - BWI76_RS04310 0.57 +1.3 888,650 - BWI76_RS04310 0.57 +0.9 888,650 - BWI76_RS04310 0.57 +0.6 888,650 - BWI76_RS04310 0.57 -0.4 888,650 - BWI76_RS04310 0.57 -0.4 888,689 + BWI76_RS04310 0.79 -3.9 888,689 + BWI76_RS04310 0.79 +1.2 888,707 - BWI76_RS04310 0.89 +3.8 888,707 - BWI76_RS04310 0.89 +1.5 888,734 + -0.2 888,757 - +1.0 888,792 + -0.3 888,810 + -1.1 888,811 - -1.6 888,818 - -0.0 888,841 + -2.6 888,841 + +0.7 888,849 - -0.2 888,849 - -1.2 888,849 - +0.2 888,854 - +0.2 888,854 - -0.5 888,856 - -1.6 888,950 + -0.8 888,950 + -3.4 889,089 + -0.6 889,303 + -2.0 889,315 + +0.1 889,330 + +1.0 889,370 - BWI76_RS04315 0.12 -1.0 889,466 - BWI76_RS04315 0.20 +0.0 889,508 - BWI76_RS04315 0.23 +0.0 889,508 - BWI76_RS04315 0.23 -0.2 889,603 + BWI76_RS04315 0.32 +1.6 889,655 + BWI76_RS04315 0.36 -0.1
Or see this region's nucleotide sequence