Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03985

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03980 and BWI76_RS03985 are separated by 139 nucleotidesBWI76_RS03985 and BWI76_RS03990 are separated by 54 nucleotides BWI76_RS03980: BWI76_RS03980 - sugar isomerase (SIS), at 823,215 to 824,225 _RS03980 BWI76_RS03985: BWI76_RS03985 - ISNCY family transposase, at 824,365 to 825,315 _RS03985 BWI76_RS03990: BWI76_RS03990 - phosphoglycerol transferase I, at 825,370 to 827,661 _RS03990 Position (kb) 824 825 826Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 823.377 kb on - strand, within BWI76_RS03980at 823.406 kb on + strand, within BWI76_RS03980at 823.406 kb on + strand, within BWI76_RS03980at 823.414 kb on - strand, within BWI76_RS03980at 823.414 kb on - strand, within BWI76_RS03980at 823.414 kb on - strand, within BWI76_RS03980at 823.414 kb on - strand, within BWI76_RS03980at 823.419 kb on - strand, within BWI76_RS03980at 823.428 kb on + strand, within BWI76_RS03980at 823.428 kb on + strand, within BWI76_RS03980at 823.472 kb on + strand, within BWI76_RS03980at 823.474 kb on + strand, within BWI76_RS03980at 823.481 kb on - strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.484 kb on + strand, within BWI76_RS03980at 823.492 kb on - strand, within BWI76_RS03980at 823.492 kb on - strand, within BWI76_RS03980at 823.492 kb on - strandat 823.492 kb on - strand, within BWI76_RS03980at 823.492 kb on - strand, within BWI76_RS03980at 823.492 kb on - strand, within BWI76_RS03980at 823.492 kb on - strand, within BWI76_RS03980at 823.519 kb on + strand, within BWI76_RS03980at 823.524 kb on - strand, within BWI76_RS03980at 823.526 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.529 kb on + strand, within BWI76_RS03980at 823.536 kb on + strand, within BWI76_RS03980at 823.536 kb on + strand, within BWI76_RS03980at 823.537 kb on - strand, within BWI76_RS03980at 823.537 kb on - strand, within BWI76_RS03980at 823.537 kb on - strand, within BWI76_RS03980at 823.537 kb on - strand, within BWI76_RS03980at 823.537 kb on - strand, within BWI76_RS03980at 823.543 kb on + strand, within BWI76_RS03980at 823.547 kb on - strand, within BWI76_RS03980at 823.557 kb on + strand, within BWI76_RS03980at 823.565 kb on + strand, within BWI76_RS03980at 823.608 kb on + strand, within BWI76_RS03980at 823.608 kb on + strand, within BWI76_RS03980at 823.608 kb on + strand, within BWI76_RS03980at 823.611 kb on - strand, within BWI76_RS03980at 823.616 kb on - strand, within BWI76_RS03980at 823.622 kb on + strand, within BWI76_RS03980at 823.630 kb on - strand, within BWI76_RS03980at 823.661 kb on - strand, within BWI76_RS03980at 823.663 kb on - strand, within BWI76_RS03980at 823.687 kb on + strand, within BWI76_RS03980at 823.723 kb on + strand, within BWI76_RS03980at 823.723 kb on + strand, within BWI76_RS03980at 823.723 kb on + strand, within BWI76_RS03980at 823.723 kb on + strand, within BWI76_RS03980at 823.723 kb on + strand, within BWI76_RS03980at 823.723 kb on + strand, within BWI76_RS03980at 823.723 kb on + strand, within BWI76_RS03980at 823.723 kb on + strandat 823.723 kb on + strand, within BWI76_RS03980at 823.723 kb on + strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.731 kb on - strand, within BWI76_RS03980at 823.752 kb on - strand, within BWI76_RS03980at 823.754 kb on + strand, within BWI76_RS03980at 823.754 kb on + strand, within BWI76_RS03980at 823.754 kb on + strand, within BWI76_RS03980at 823.754 kb on + strand, within BWI76_RS03980at 823.754 kb on + strand, within BWI76_RS03980at 823.754 kb on + strand, within BWI76_RS03980at 823.762 kb on - strand, within BWI76_RS03980at 823.762 kb on - strand, within BWI76_RS03980at 823.762 kb on - strand, within BWI76_RS03980at 823.762 kb on - strand, within BWI76_RS03980at 823.763 kb on - strand, within BWI76_RS03980at 823.764 kb on - strand, within BWI76_RS03980at 823.799 kb on + strand, within BWI76_RS03980at 823.799 kb on + strand, within BWI76_RS03980at 823.799 kb on + strand, within BWI76_RS03980at 823.799 kb on + strand, within BWI76_RS03980at 823.812 kb on + strand, within BWI76_RS03980at 823.825 kb on - strand, within BWI76_RS03980at 823.834 kb on + strand, within BWI76_RS03980at 823.844 kb on - strand, within BWI76_RS03980at 823.852 kb on + strand, within BWI76_RS03980at 823.854 kb on + strand, within BWI76_RS03980at 823.854 kb on + strand, within BWI76_RS03980at 823.860 kb on - strand, within BWI76_RS03980at 823.901 kb on + strand, within BWI76_RS03980at 823.976 kb on + strand, within BWI76_RS03980at 823.994 kb on + strand, within BWI76_RS03980at 824.047 kb on + strand, within BWI76_RS03980at 824.161 kb on + strandat 824.245 kb on + strandat 824.546 kb on + strand, within BWI76_RS03985at 824.546 kb on + strand, within BWI76_RS03985at 824.587 kb on + strand, within BWI76_RS03985at 824.590 kb on - strand, within BWI76_RS03985at 824.595 kb on - strand, within BWI76_RS03985at 824.975 kb on - strand, within BWI76_RS03985at 824.975 kb on - strand, within BWI76_RS03985at 825.097 kb on - strand, within BWI76_RS03985at 825.185 kb on - strand, within BWI76_RS03985at 825.235 kb on + strandat 825.262 kb on + strandat 825.506 kb on - strandat 825.612 kb on - strand, within BWI76_RS03990at 825.690 kb on + strand, within BWI76_RS03990at 825.698 kb on - strand, within BWI76_RS03990at 825.827 kb on + strand, within BWI76_RS03990at 825.835 kb on - strand, within BWI76_RS03990at 825.842 kb on - strand, within BWI76_RS03990at 826.055 kb on - strand, within BWI76_RS03990at 826.235 kb on + strand, within BWI76_RS03990at 826.236 kb on + strand, within BWI76_RS03990at 826.313 kb on - strand, within BWI76_RS03990

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
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823,377 - BWI76_RS03980 0.16 +1.2
823,406 + BWI76_RS03980 0.19 -0.4
823,406 + BWI76_RS03980 0.19 +1.0
823,414 - BWI76_RS03980 0.20 +0.4
823,414 - BWI76_RS03980 0.20 -2.0
823,414 - BWI76_RS03980 0.20 -3.3
823,414 - BWI76_RS03980 0.20 +0.1
823,419 - BWI76_RS03980 0.20 +1.0
823,428 + BWI76_RS03980 0.21 -0.9
823,428 + BWI76_RS03980 0.21 +0.8
823,472 + BWI76_RS03980 0.25 +0.4
823,474 + BWI76_RS03980 0.26 -0.8
823,481 - BWI76_RS03980 0.26 -0.1
823,484 + BWI76_RS03980 0.27 +1.4
823,484 + BWI76_RS03980 0.27 -0.4
823,484 + BWI76_RS03980 0.27 -2.5
823,484 + BWI76_RS03980 0.27 +1.7
823,484 + BWI76_RS03980 0.27 -1.9
823,484 + BWI76_RS03980 0.27 +0.8
823,484 + BWI76_RS03980 0.27 +1.0
823,484 + BWI76_RS03980 0.27 +2.1
823,484 + BWI76_RS03980 0.27 -1.1
823,484 + BWI76_RS03980 0.27 +0.8
823,484 + BWI76_RS03980 0.27 -0.5
823,484 + BWI76_RS03980 0.27 -1.8
823,492 - BWI76_RS03980 0.27 -1.5
823,492 - BWI76_RS03980 0.27 -0.3
823,492 - +1.1
823,492 - BWI76_RS03980 0.27 -0.6
823,492 - BWI76_RS03980 0.27 +1.6
823,492 - BWI76_RS03980 0.27 -1.0
823,492 - BWI76_RS03980 0.27 -0.9
823,519 + BWI76_RS03980 0.30 -0.5
823,524 - BWI76_RS03980 0.31 +1.6
823,526 + BWI76_RS03980 0.31 +1.0
823,529 + BWI76_RS03980 0.31 -0.1
823,529 + BWI76_RS03980 0.31 -1.3
823,529 + BWI76_RS03980 0.31 -2.0
823,529 + BWI76_RS03980 0.31 +0.1
823,529 + BWI76_RS03980 0.31 +0.4
823,529 + BWI76_RS03980 0.31 -1.3
823,529 + BWI76_RS03980 0.31 -0.5
823,529 + BWI76_RS03980 0.31 +1.6
823,529 + BWI76_RS03980 0.31 -1.9
823,529 + BWI76_RS03980 0.31 -1.2
823,529 + BWI76_RS03980 0.31 +0.8
823,536 + BWI76_RS03980 0.32 -2.4
823,536 + BWI76_RS03980 0.32 -1.3
823,537 - BWI76_RS03980 0.32 +0.9
823,537 - BWI76_RS03980 0.32 +0.5
823,537 - BWI76_RS03980 0.32 -0.9
823,537 - BWI76_RS03980 0.32 +0.1
823,537 - BWI76_RS03980 0.32 +0.5
823,543 + BWI76_RS03980 0.32 +0.6
823,547 - BWI76_RS03980 0.33 -0.5
823,557 + BWI76_RS03980 0.34 -0.5
823,565 + BWI76_RS03980 0.35 -2.4
823,608 + BWI76_RS03980 0.39 +0.1
823,608 + BWI76_RS03980 0.39 -2.1
823,608 + BWI76_RS03980 0.39 +0.8
823,611 - BWI76_RS03980 0.39 +1.4
823,616 - BWI76_RS03980 0.40 -0.5
823,622 + BWI76_RS03980 0.40 -0.7
823,630 - BWI76_RS03980 0.41 -1.9
823,661 - BWI76_RS03980 0.44 +0.3
823,663 - BWI76_RS03980 0.44 -0.5
823,687 + BWI76_RS03980 0.47 -0.7
823,723 + BWI76_RS03980 0.50 +0.1
823,723 + BWI76_RS03980 0.50 +2.6
823,723 + BWI76_RS03980 0.50 +0.5
823,723 + BWI76_RS03980 0.50 +2.3
823,723 + BWI76_RS03980 0.50 +0.4
823,723 + BWI76_RS03980 0.50 +0.1
823,723 + BWI76_RS03980 0.50 +1.0
823,723 + +0.4
823,723 + BWI76_RS03980 0.50 +1.0
823,723 + BWI76_RS03980 0.50 -2.8
823,731 - BWI76_RS03980 0.51 +1.6
823,731 - BWI76_RS03980 0.51 +0.4
823,731 - BWI76_RS03980 0.51 -0.9
823,731 - BWI76_RS03980 0.51 -0.8
823,731 - BWI76_RS03980 0.51 -3.4
823,731 - BWI76_RS03980 0.51 +0.7
823,731 - BWI76_RS03980 0.51 -0.9
823,731 - BWI76_RS03980 0.51 +0.1
823,731 - BWI76_RS03980 0.51 +0.5
823,731 - BWI76_RS03980 0.51 -0.9
823,752 - BWI76_RS03980 0.53 +0.8
823,754 + BWI76_RS03980 0.53 -2.1
823,754 + BWI76_RS03980 0.53 -1.9
823,754 + BWI76_RS03980 0.53 +1.1
823,754 + BWI76_RS03980 0.53 +0.5
823,754 + BWI76_RS03980 0.53 -2.3
823,754 + BWI76_RS03980 0.53 -0.7
823,762 - BWI76_RS03980 0.54 -3.3
823,762 - BWI76_RS03980 0.54 -1.5
823,762 - BWI76_RS03980 0.54 +0.2
823,762 - BWI76_RS03980 0.54 +2.1
823,763 - BWI76_RS03980 0.54 -0.9
823,764 - BWI76_RS03980 0.54 -3.2
823,799 + BWI76_RS03980 0.58 +1.1
823,799 + BWI76_RS03980 0.58 +1.1
823,799 + BWI76_RS03980 0.58 +0.1
823,799 + BWI76_RS03980 0.58 -0.4
823,812 + BWI76_RS03980 0.59 +1.4
823,825 - BWI76_RS03980 0.60 -0.8
823,834 + BWI76_RS03980 0.61 -0.3
823,844 - BWI76_RS03980 0.62 -1.5
823,852 + BWI76_RS03980 0.63 -0.5
823,854 + BWI76_RS03980 0.63 +0.8
823,854 + BWI76_RS03980 0.63 -0.7
823,860 - BWI76_RS03980 0.64 +0.4
823,901 + BWI76_RS03980 0.68 -2.3
823,976 + BWI76_RS03980 0.75 -0.4
823,994 + BWI76_RS03980 0.77 -0.7
824,047 + BWI76_RS03980 0.82 +1.5
824,161 + -0.9
824,245 + -0.6
824,546 + BWI76_RS03985 0.19 -0.1
824,546 + BWI76_RS03985 0.19 +0.7
824,587 + BWI76_RS03985 0.23 +0.9
824,590 - BWI76_RS03985 0.24 -0.7
824,595 - BWI76_RS03985 0.24 -0.0
824,975 - BWI76_RS03985 0.64 +0.1
824,975 - BWI76_RS03985 0.64 -0.6
825,097 - BWI76_RS03985 0.77 -3.2
825,185 - BWI76_RS03985 0.86 -2.1
825,235 + +0.0
825,262 + +1.1
825,506 - +1.8
825,612 - BWI76_RS03990 0.11 +2.4
825,690 + BWI76_RS03990 0.14 +0.8
825,698 - BWI76_RS03990 0.14 +0.8
825,827 + BWI76_RS03990 0.20 -0.7
825,835 - BWI76_RS03990 0.20 -0.5
825,842 - BWI76_RS03990 0.21 +1.0
826,055 - BWI76_RS03990 0.30 +1.4
826,235 + BWI76_RS03990 0.38 +1.1
826,236 + BWI76_RS03990 0.38 +0.4
826,313 - BWI76_RS03990 0.41 -0.5

Or see this region's nucleotide sequence