Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03625 and BWI76_RS03630 are separated by 87 nucleotides BWI76_RS03630 and BWI76_RS03635 overlap by 7 nucleotides BWI76_RS03635 and BWI76_RS03640 are separated by 158 nucleotides
BWI76_RS03625: BWI76_RS03625 - NAD(P)H quinone oxidoreductase, at 749,309 to 750,091
_RS03625
BWI76_RS03630: BWI76_RS03630 - LysR family transcriptional regulator, at 750,179 to 751,087
_RS03630
BWI76_RS03635: BWI76_RS03635 - FosA family fosfomycin resistance glutathione transferase, at 751,081 to 751,524
_RS03635
BWI76_RS03640: BWI76_RS03640 - amino acid permease-associated protein, at 751,683 to 753,026
_RS03640
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.219 kb on - strand at 749.320 kb on - strand at 749.376 kb on - strand at 749.381 kb on + strand at 749.483 kb on - strand, within BWI76_RS03625 at 749.530 kb on + strand, within BWI76_RS03625 at 749.538 kb on - strand, within BWI76_RS03625 at 749.568 kb on + strand, within BWI76_RS03625 at 749.610 kb on + strand at 749.739 kb on + strand, within BWI76_RS03625 at 749.739 kb on + strand, within BWI76_RS03625 at 749.754 kb on + strand, within BWI76_RS03625 at 749.757 kb on - strand, within BWI76_RS03625 at 749.970 kb on + strand, within BWI76_RS03625 at 749.978 kb on - strand, within BWI76_RS03625 at 749.984 kb on + strand, within BWI76_RS03625 at 750.123 kb on + strand at 750.263 kb on - strand at 750.294 kb on + strand, within BWI76_RS03630 at 750.475 kb on - strand, within BWI76_RS03630 at 750.534 kb on - strand, within BWI76_RS03630 at 750.548 kb on + strand, within BWI76_RS03630 at 750.734 kb on + strand, within BWI76_RS03630 at 750.734 kb on + strand, within BWI76_RS03630 at 750.751 kb on + strand, within BWI76_RS03630 at 750.880 kb on + strand, within BWI76_RS03630 at 750.948 kb on + strand, within BWI76_RS03630 at 751.005 kb on + strand at 751.646 kb on - strand at 751.769 kb on + strand at 751.861 kb on - strand, within BWI76_RS03640 at 751.946 kb on - strand, within BWI76_RS03640 at 751.990 kb on - strand, within BWI76_RS03640
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 749,219 - -1.3 749,320 - +0.9 749,376 - +2.1 749,381 + +0.1 749,483 - BWI76_RS03625 0.22 +1.1 749,530 + BWI76_RS03625 0.28 +0.3 749,538 - BWI76_RS03625 0.29 +1.3 749,568 + BWI76_RS03625 0.33 +0.1 749,610 + +1.1 749,739 + BWI76_RS03625 0.55 -1.9 749,739 + BWI76_RS03625 0.55 +0.2 749,754 + BWI76_RS03625 0.57 -0.9 749,757 - BWI76_RS03625 0.57 -2.6 749,970 + BWI76_RS03625 0.84 -2.1 749,978 - BWI76_RS03625 0.85 +0.3 749,984 + BWI76_RS03625 0.86 +0.6 750,123 + -0.2 750,263 - +0.3 750,294 + BWI76_RS03630 0.13 -0.3 750,475 - BWI76_RS03630 0.33 -0.6 750,534 - BWI76_RS03630 0.39 -2.0 750,548 + BWI76_RS03630 0.41 -0.3 750,734 + BWI76_RS03630 0.61 -1.8 750,734 + BWI76_RS03630 0.61 +1.3 750,751 + BWI76_RS03630 0.63 -2.9 750,880 + BWI76_RS03630 0.77 +0.3 750,948 + BWI76_RS03630 0.85 -0.4 751,005 + -1.8 751,646 - +0.1 751,769 + -1.2 751,861 - BWI76_RS03640 0.13 +0.2 751,946 - BWI76_RS03640 0.20 +0.5 751,990 - BWI76_RS03640 0.23 -0.5
Or see this region's nucleotide sequence