Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03165 and BWI76_RS03170 are separated by 17 nucleotides BWI76_RS03170 and BWI76_RS03175 overlap by 4 nucleotides BWI76_RS03175 and BWI76_RS03180 are separated by 550 nucleotides BWI76_RS03180 and BWI76_RS03185 overlap by 4 nucleotides
BWI76_RS03165: BWI76_RS03165 - phage polarity suppression protein, at 654,232 to 654,798
_RS03165
BWI76_RS03170: BWI76_RS03170 - hypothetical protein, at 654,816 to 655,061
_RS03170
BWI76_RS03175: BWI76_RS03175 - hypothetical protein, at 655,058 to 655,795
_RS03175
BWI76_RS03180: BWI76_RS03180 - phage transcriptional regulator, AlpA, at 656,346 to 656,612
_RS03180
BWI76_RS03185: BWI76_RS03185 - CI repressor, at 656,609 to 657,166
_RS03185
Position (kb) 655
656 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 654.249 kb on - strand at 654.249 kb on - strand at 654.321 kb on + strand, within BWI76_RS03165 at 654.416 kb on - strand, within BWI76_RS03165 at 654.420 kb on + strand, within BWI76_RS03165 at 654.436 kb on + strand, within BWI76_RS03165 at 654.518 kb on - strand, within BWI76_RS03165 at 654.536 kb on - strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.671 kb on - strand, within BWI76_RS03165 at 654.671 kb on - strand, within BWI76_RS03165 at 654.674 kb on + strand, within BWI76_RS03165 at 654.682 kb on - strand, within BWI76_RS03165 at 654.807 kb on - strand at 654.843 kb on + strand, within BWI76_RS03170 at 654.932 kb on + strand, within BWI76_RS03170 at 654.940 kb on - strand, within BWI76_RS03170 at 654.940 kb on - strand, within BWI76_RS03170 at 655.324 kb on + strand, within BWI76_RS03175 at 655.344 kb on - strand, within BWI76_RS03175 at 655.377 kb on - strand, within BWI76_RS03175 at 655.421 kb on - strand, within BWI76_RS03175 at 655.481 kb on - strand, within BWI76_RS03175 at 655.714 kb on + strand, within BWI76_RS03175 at 655.714 kb on + strand, within BWI76_RS03175 at 655.733 kb on + strand at 656.051 kb on + strand at 656.059 kb on - strand at 656.059 kb on - strand at 656.292 kb on + strand at 656.402 kb on + strand, within BWI76_RS03180 at 656.402 kb on + strand, within BWI76_RS03180 at 656.410 kb on - strand, within BWI76_RS03180 at 656.784 kb on - strand, within BWI76_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 654,249 - -0.3 654,249 - +1.1 654,321 + BWI76_RS03165 0.16 -0.9 654,416 - BWI76_RS03165 0.32 -0.9 654,420 + BWI76_RS03165 0.33 +0.8 654,436 + BWI76_RS03165 0.36 +0.5 654,518 - BWI76_RS03165 0.50 +1.6 654,536 - BWI76_RS03165 0.54 -0.9 654,663 + BWI76_RS03165 0.76 +0.9 654,663 + BWI76_RS03165 0.76 +0.5 654,663 + BWI76_RS03165 0.76 +3.1 654,671 - BWI76_RS03165 0.77 -0.4 654,671 - BWI76_RS03165 0.77 +0.2 654,674 + BWI76_RS03165 0.78 +0.5 654,682 - BWI76_RS03165 0.79 -0.6 654,807 - +0.0 654,843 + BWI76_RS03170 0.11 +0.3 654,932 + BWI76_RS03170 0.47 +0.4 654,940 - BWI76_RS03170 0.50 +0.5 654,940 - BWI76_RS03170 0.50 -0.9 655,324 + BWI76_RS03175 0.36 +1.3 655,344 - BWI76_RS03175 0.39 -1.2 655,377 - BWI76_RS03175 0.43 +0.2 655,421 - BWI76_RS03175 0.49 +1.1 655,481 - BWI76_RS03175 0.57 -2.2 655,714 + BWI76_RS03175 0.89 -0.2 655,714 + BWI76_RS03175 0.89 -2.7 655,733 + +1.1 656,051 + -0.9 656,059 - -0.3 656,059 - +0.3 656,292 + +0.6 656,402 + BWI76_RS03180 0.21 +0.1 656,402 + BWI76_RS03180 0.21 -0.1 656,410 - BWI76_RS03180 0.24 -0.9 656,784 - BWI76_RS03185 0.31 -0.5
Or see this region's nucleotide sequence