Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01690 and BWI76_RS01695 are separated by 261 nucleotides BWI76_RS01695 and BWI76_RS01700 are separated by 243 nucleotides
BWI76_RS01690: BWI76_RS01690 - membrane protein, at 347,020 to 348,651
_RS01690
BWI76_RS01695: BWI76_RS01695 - IS110 family transposase, at 348,913 to 349,893
_RS01695
BWI76_RS01700: BWI76_RS01700 - dipeptidase E, at 350,137 to 350,826
_RS01700
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 347.927 kb on - strand, within BWI76_RS01690 at 347.994 kb on + strand, within BWI76_RS01690 at 347.994 kb on + strand, within BWI76_RS01690 at 348.590 kb on + strand at 348.598 kb on - strand at 348.607 kb on - strand at 348.669 kb on + strand at 348.971 kb on + strand at 349.010 kb on + strand at 349.027 kb on + strand, within BWI76_RS01695 at 349.073 kb on + strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.093 kb on + strand, within BWI76_RS01695 at 349.097 kb on + strand, within BWI76_RS01695 at 349.102 kb on + strand, within BWI76_RS01695 at 349.492 kb on - strand, within BWI76_RS01695 at 349.569 kb on + strand, within BWI76_RS01695 at 349.607 kb on + strand, within BWI76_RS01695 at 349.633 kb on - strand, within BWI76_RS01695 at 349.633 kb on - strand, within BWI76_RS01695 at 349.680 kb on - strand, within BWI76_RS01695 at 349.680 kb on - strand, within BWI76_RS01695 at 349.708 kb on + strand, within BWI76_RS01695 at 349.733 kb on - strand, within BWI76_RS01695 at 349.743 kb on - strand, within BWI76_RS01695 at 349.845 kb on - strand at 349.860 kb on + strand at 350.096 kb on - strand at 350.153 kb on + strand at 350.188 kb on - strand at 350.202 kb on - strand at 350.219 kb on + strand, within BWI76_RS01700 at 350.219 kb on + strand, within BWI76_RS01700 at 350.282 kb on - strand, within BWI76_RS01700 at 350.293 kb on - strand, within BWI76_RS01700 at 350.293 kb on - strand, within BWI76_RS01700 at 350.457 kb on - strand, within BWI76_RS01700 at 350.457 kb on - strand, within BWI76_RS01700 at 350.722 kb on - strand, within BWI76_RS01700 at 350.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 347,927 - BWI76_RS01690 0.56 -1.3 347,994 + BWI76_RS01690 0.60 +1.3 347,994 + BWI76_RS01690 0.60 +1.7 348,590 + -0.1 348,598 - +0.8 348,607 - +1.2 348,669 + +0.6 348,971 + +1.6 349,010 + -0.8 349,027 + BWI76_RS01695 0.12 -0.7 349,073 + BWI76_RS01695 0.16 +0.2 349,081 - BWI76_RS01695 0.17 -0.2 349,081 - BWI76_RS01695 0.17 +1.1 349,081 - BWI76_RS01695 0.17 +0.2 349,081 - BWI76_RS01695 0.17 +0.5 349,093 + BWI76_RS01695 0.18 +0.6 349,097 + BWI76_RS01695 0.19 -1.5 349,102 + BWI76_RS01695 0.19 +0.9 349,492 - BWI76_RS01695 0.59 +0.6 349,569 + BWI76_RS01695 0.67 +0.1 349,607 + BWI76_RS01695 0.71 +1.7 349,633 - BWI76_RS01695 0.73 +1.3 349,633 - BWI76_RS01695 0.73 +1.0 349,680 - BWI76_RS01695 0.78 +1.3 349,680 - BWI76_RS01695 0.78 -0.8 349,708 + BWI76_RS01695 0.81 -2.9 349,733 - BWI76_RS01695 0.84 -0.8 349,743 - BWI76_RS01695 0.85 +0.5 349,845 - -0.6 349,860 + +0.2 350,096 - -1.1 350,153 + +0.1 350,188 - +1.4 350,202 - +1.5 350,219 + BWI76_RS01700 0.12 -1.6 350,219 + BWI76_RS01700 0.12 +1.0 350,282 - BWI76_RS01700 0.21 +2.1 350,293 - BWI76_RS01700 0.23 +0.2 350,293 - BWI76_RS01700 0.23 -1.2 350,457 - BWI76_RS01700 0.46 +0.6 350,457 - BWI76_RS01700 0.46 +0.1 350,722 - BWI76_RS01700 0.85 +1.5 350,780 - +0.6
Or see this region's nucleotide sequence