Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00275 and BWI76_RS00280 are separated by 5 nucleotides BWI76_RS00280 and BWI76_RS00285 are separated by 27 nucleotides
BWI76_RS00275: BWI76_RS00275 - ribose ABC transporter ATP-binding protein RbsA, at 56,739 to 58,244
_RS00275
BWI76_RS00280: BWI76_RS00280 - ribose ABC transporter permease, at 58,250 to 59,215
_RS00280
BWI76_RS00285: BWI76_RS00285 - D-ribose ABC transporter substrate-binding protein, at 59,243 to 60,133
_RS00285
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.329 kb on - strand, within BWI76_RS00275 at 57.400 kb on - strand, within BWI76_RS00275 at 57.553 kb on + strand, within BWI76_RS00275 at 57.596 kb on + strand, within BWI76_RS00275 at 57.628 kb on - strand, within BWI76_RS00275 at 57.640 kb on - strand, within BWI76_RS00275 at 57.661 kb on + strand, within BWI76_RS00275 at 57.669 kb on - strand, within BWI76_RS00275 at 57.726 kb on + strand, within BWI76_RS00275 at 57.733 kb on + strand, within BWI76_RS00275 at 57.764 kb on - strand at 57.770 kb on - strand, within BWI76_RS00275 at 57.806 kb on + strand, within BWI76_RS00275 at 57.814 kb on - strand, within BWI76_RS00275 at 57.913 kb on + strand, within BWI76_RS00275 at 58.020 kb on - strand, within BWI76_RS00275 at 58.093 kb on + strand, within BWI76_RS00275 at 58.101 kb on - strand at 58.129 kb on + strand at 58.395 kb on - strand, within BWI76_RS00280 at 58.395 kb on - strand, within BWI76_RS00280 at 58.442 kb on - strand at 58.490 kb on + strand, within BWI76_RS00280 at 58.779 kb on + strand, within BWI76_RS00280 at 58.819 kb on + strand, within BWI76_RS00280 at 58.829 kb on + strand, within BWI76_RS00280 at 59.158 kb on - strand at 59.173 kb on + strand at 59.215 kb on + strand at 59.231 kb on - strand at 59.272 kb on - strand at 59.417 kb on - strand, within BWI76_RS00285 at 59.538 kb on - strand, within BWI76_RS00285 at 59.546 kb on - strand, within BWI76_RS00285 at 59.758 kb on + strand, within BWI76_RS00285 at 59.758 kb on + strand, within BWI76_RS00285 at 59.775 kb on + strand, within BWI76_RS00285 at 59.830 kb on - strand, within BWI76_RS00285 at 60.108 kb on + strand at 60.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 57,329 - BWI76_RS00275 0.39 -1.7 57,400 - BWI76_RS00275 0.44 +1.2 57,553 + BWI76_RS00275 0.54 +0.3 57,596 + BWI76_RS00275 0.57 -0.7 57,628 - BWI76_RS00275 0.59 -1.6 57,640 - BWI76_RS00275 0.60 -1.4 57,661 + BWI76_RS00275 0.61 -3.4 57,669 - BWI76_RS00275 0.62 -1.3 57,726 + BWI76_RS00275 0.66 +0.6 57,733 + BWI76_RS00275 0.66 +0.4 57,764 - -0.4 57,770 - BWI76_RS00275 0.68 -0.5 57,806 + BWI76_RS00275 0.71 -2.4 57,814 - BWI76_RS00275 0.71 +0.4 57,913 + BWI76_RS00275 0.78 +1.0 58,020 - BWI76_RS00275 0.85 -1.1 58,093 + BWI76_RS00275 0.90 +0.7 58,101 - -0.2 58,129 + +1.0 58,395 - BWI76_RS00280 0.15 +0.1 58,395 - BWI76_RS00280 0.15 +0.8 58,442 - +1.2 58,490 + BWI76_RS00280 0.25 -1.7 58,779 + BWI76_RS00280 0.55 +0.6 58,819 + BWI76_RS00280 0.59 -0.2 58,829 + BWI76_RS00280 0.60 +1.6 59,158 - +1.2 59,173 + +0.4 59,215 + +0.7 59,231 - -1.8 59,272 - +0.9 59,417 - BWI76_RS00285 0.20 -1.4 59,538 - BWI76_RS00285 0.33 +0.2 59,546 - BWI76_RS00285 0.34 -1.1 59,758 + BWI76_RS00285 0.58 +1.8 59,758 + BWI76_RS00285 0.58 +1.6 59,775 + BWI76_RS00285 0.60 +0.1 59,830 - BWI76_RS00285 0.66 +2.2 60,108 + +0.9 60,116 - +0.1
Or see this region's nucleotide sequence