Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35055

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,466,604	+		BPHYT_RS35050	0.60	-0.5
3,466,676	+		BPHYT_RS35050	0.66	-0.0
3,466,677	-		BPHYT_RS35050	0.66	+0.1
3,466,677	-		BPHYT_RS35050	0.66	+1.0
3,466,760	+		BPHYT_RS35050	0.74	+0.0
3,466,921	-		BPHYT_RS35050	0.88	-0.5
3,466,942	+				-0.7
3,466,942	+				+0.3
3,466,942	+				-0.4
3,466,948	+				-2.7
3,466,968	+				-1.4
3,466,968	+				-0.8
3,466,968	+				-2.1
3,466,968	+				-3.6
3,466,969	-				+0.5
3,466,969	-				+1.6
3,466,969	-				-2.1
3,466,969	-				+0.8
3,466,970	+				-3.2
3,466,971	-				-0.1
3,467,046	+				-2.5
3,467,047	-				+0.1
3,467,047	-				+1.3
3,467,119	-				+0.4
3,467,128	+				-1.2
3,467,129	-				+0.2
3,467,129	-				-1.7
3,467,129	-				+0.3
3,467,334	+				+2.6
3,467,455	+				-0.5
3,467,456	-				-0.2
3,467,456	-				-1.0
3,467,480	+				+0.2
3,467,481	-				+0.1
3,467,597	+				-0.2
3,467,856	-		BPHYT_RS35055	0.53	+0.8
3,467,970	-		BPHYT_RS35055	0.72	-2.4
3,468,053	+		BPHYT_RS35055	0.85	-0.4
3,468,054	-		BPHYT_RS35055	0.86	+0.2
3,468,073	+		BPHYT_RS35055	0.89	-2.1
3,468,073	+		BPHYT_RS35055	0.89	+0.0
3,468,074	-		BPHYT_RS35055	0.89	+0.4
3,468,075	+		BPHYT_RS35055	0.89	+0.8
3,468,075	+		BPHYT_RS35055	0.89	-0.3
3,468,075	+		BPHYT_RS35055	0.89	-0.4
3,468,154	+				-0.6
3,468,155	-				-3.1
3,468,155	-				+1.5
3,468,155	-				-1.6
3,468,361	-		BPHYT_RS35060	0.12	+1.4
3,468,369	+		BPHYT_RS35060	0.12	+2.9
3,468,370	-		BPHYT_RS35060	0.12	+0.5
3,468,936	-		BPHYT_RS35060	0.51	+1.0
3,469,059	+		BPHYT_RS35060	0.60	-1.0