Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34765

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,403,797	+		BPHYT_RS34760	0.89	+0.4
3,403,797	+		BPHYT_RS34760	0.89	-0.8
3,404,104	+				-0.4
3,404,104	+				+0.1
3,404,104	+				-0.6
3,404,104	+				+0.0
3,404,105	-				-0.8
3,404,105	-				-1.2
3,404,105	-				-2.5
3,404,115	+				-0.4
3,404,115	+				+0.5
3,404,115	+				+1.0
3,404,132	+				+0.3
3,404,133	-				-1.6
3,404,139	+				+0.2
3,404,244	+				+0.1
3,404,245	-				-0.7
3,404,388	+				+0.7
3,404,388	+				+0.4
3,404,449	+				-0.4
3,404,449	+				+0.3
3,404,531	+				+0.2
3,404,531	+				-0.5
3,404,531	+				+0.5
3,404,779	+				-0.6
3,404,779	+				-0.9
3,404,779	+				+0.5
3,404,780	-				-0.2
3,404,861	+		BPHYT_RS34765	0.25	-0.7
3,404,862	-		BPHYT_RS34765	0.25	-2.9
3,404,954	+		BPHYT_RS34765	0.50	-1.3
3,405,100	-				+0.3
3,405,103	-				-1.7
3,405,103	-				+0.8
3,405,128	+				-0.2
3,405,128	+				-0.6
3,405,128	+				+0.5
3,405,128	+				+2.0
3,405,129	-				-0.2
3,405,129	-				-1.4
3,405,429	+		BPHYT_RS34770	0.48	-0.9
3,405,430	-		BPHYT_RS34770	0.48	-0.9
3,405,444	+		BPHYT_RS34770	0.50	-0.5
3,405,634	+		BPHYT_RS34770	0.81	+0.1
3,405,634	+		BPHYT_RS34770	0.81	+0.0
3,405,634	+		BPHYT_RS34770	0.81	-3.1
3,405,635	-		BPHYT_RS34770	0.81	-1.6
3,405,714	-				+0.5
3,405,748	+				-2.3
3,405,748	+				-0.4
3,405,749	-				-0.9
3,405,906	-		BPHYT_RS34775	0.17	-1.2
3,405,906	-		BPHYT_RS34775	0.17	-1.6