Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34645
Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vogels_fungal_media; pH 5.5 |
---|---|---|---|---|---|
remove | |||||
3,379,270 | + | +1.5 | |||
3,379,271 | - | +0.3 | |||
3,379,793 | - | BPHYT_RS34640 | 0.77 | +2.8 | |
3,379,865 | - | BPHYT_RS34640 | 0.88 | -1.5 | |
3,379,948 | + | +1.5 | |||
3,379,949 | - | +0.6 | |||
3,380,019 | + | +0.1 | |||
3,380,020 | - | -0.5 | |||
3,380,020 | - | +0.1 | |||
3,380,148 | - | BPHYT_RS34645 | 0.14 | -1.8 | |
3,380,148 | - | BPHYT_RS34645 | 0.14 | +0.1 | |
3,380,154 | - | BPHYT_RS34645 | 0.15 | -1.4 | |
3,380,247 | + | BPHYT_RS34645 | 0.29 | -0.4 | |
3,380,248 | - | BPHYT_RS34645 | 0.30 | -2.2 | |
3,380,635 | - | BPHYT_RS34645 | 0.89 | -0.1 | |
3,380,654 | + | +0.5 | |||
3,380,800 | - | +0.6 | |||
3,381,094 | - | BPHYT_RS34650 | 0.28 | -2.0 | |
3,381,094 | - | BPHYT_RS34650 | 0.28 | +1.1 | |
3,381,240 | - | BPHYT_RS34650 | 0.42 | -1.2 | |
3,381,642 | - | BPHYT_RS34650 | 0.81 | -1.1 |
Or see this region's nucleotide sequence