Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34535

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,354,790	-		BPHYT_RS34530	0.19	+0.3
3,354,807	-		BPHYT_RS34530	0.21	+1.6
3,355,544	+				+3.2
3,355,605	+				-0.0
3,355,606	-				+0.8
3,355,923	+		BPHYT_RS34535	0.28	+2.2
3,356,102	+		BPHYT_RS34535	0.47	+0.2
3,356,103	-		BPHYT_RS34535	0.47	+0.4
3,356,513	+		BPHYT_RS34535	0.89	+0.3
3,356,514	-		BPHYT_RS34535	0.89	-0.6
3,356,514	-		BPHYT_RS34535	0.89	-0.5
3,356,514	-		BPHYT_RS34535	0.89	+1.2
3,356,617	+				+0.8
3,356,617	+				-0.4
3,356,693	+				-0.7
3,357,030	+		BPHYT_RS34540	0.42	-0.6
3,357,175	+		BPHYT_RS34540	0.61	+1.0
3,357,176	-		BPHYT_RS34540	0.61	+0.8
3,357,277	-		BPHYT_RS34540	0.74	+0.7
3,357,283	-		BPHYT_RS34540	0.75	+0.7
3,357,403	+				-3.2
3,357,469	+				+1.0
3,357,551	+				+0.2