Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34125

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,256,670	-				-2.5
3,256,670	-				-1.3
3,256,766	-				+0.1
3,256,843	+				-0.0
3,256,843	+				+0.9
3,256,843	+				+2.2
3,256,843	+				-0.1
3,256,843	+				-0.1
3,256,843	+				-1.3
3,257,100	+		BPHYT_RS34120	0.40	-1.2
3,257,101	-		BPHYT_RS34120	0.40	+1.4
3,257,156	-		BPHYT_RS34120	0.49	+0.3
3,257,161	+		BPHYT_RS34120	0.49	-0.7
3,257,161	+		BPHYT_RS34120	0.49	-1.1
3,257,161	+		BPHYT_RS34120	0.49	+1.1
3,257,161	+		BPHYT_RS34120	0.49	-0.5
3,257,161	+		BPHYT_RS34120	0.49	+0.8
3,257,161	+		BPHYT_RS34120	0.49	+0.9
3,257,162	-		BPHYT_RS34120	0.49	-1.1
3,257,162	-		BPHYT_RS34120	0.49	-0.7
3,257,162	-		BPHYT_RS34120	0.49	-0.4
3,257,162	-		BPHYT_RS34120	0.49	-0.2
3,257,162	-		BPHYT_RS34120	0.49	-3.1
3,257,162	-		BPHYT_RS34120	0.49	+0.9
3,257,163	+		BPHYT_RS34120	0.50	-3.9
3,257,615	+				-0.6
3,257,615	+				-0.3
3,257,616	-				+1.4
3,257,859	+				-1.2
3,258,361	-		BPHYT_RS34125	0.28	+0.4
3,258,438	+		BPHYT_RS34125	0.31	-0.3
3,258,438	+		BPHYT_RS34125	0.31	-2.4
3,258,454	-		BPHYT_RS34125	0.32	-1.5
3,258,492	+		BPHYT_RS34125	0.33	-2.5
3,258,493	-		BPHYT_RS34125	0.33	-2.0
3,259,988	+				-1.5
3,259,988	+				-2.0
3,259,989	-				-2.0
3,259,989	-				+0.0
3,260,089	-				-2.3
3,260,401	+				-0.2
3,260,402	-				-0.3
3,260,434	-				-0.2
3,260,978	+		BPHYT_RS34130	0.27	+0.2
3,261,021	+		BPHYT_RS34130	0.29	+0.2
3,261,144	+		BPHYT_RS34130	0.35	-2.1
3,261,145	-		BPHYT_RS34130	0.35	+0.4
3,261,148	-		BPHYT_RS34130	0.35	-1.0