Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33915

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,199,865	+		BPHYT_RS33905	0.19	+1.3
3,200,256	-		BPHYT_RS33905	0.78	-3.3
3,200,380	+				-0.5
3,200,668	-				+0.7
3,200,728	-				-4.3
3,200,982	-		BPHYT_RS33915	0.24	-3.5
3,200,982	-		BPHYT_RS33915	0.24	-6.0
3,201,087	-		BPHYT_RS33915	0.31	-2.4
3,201,278	+		BPHYT_RS33915	0.45	-2.8
3,201,783	-		BPHYT_RS33915	0.80	-3.1
3,201,783	-		BPHYT_RS33915	0.80	-3.7
3,201,870	+		BPHYT_RS33915	0.87	-4.9
3,201,870	+		BPHYT_RS33915	0.87	-2.1
3,201,871	-		BPHYT_RS33915	0.87	-4.1
3,201,984	-				-3.4
3,202,043	+				-3.9
3,202,044	-				-3.9
3,202,063	-				-3.5
3,202,072	-				-0.1
3,202,074	+				-0.4
3,202,075	-				-0.1
3,202,191	+				+0.5
3,202,337	+				-2.5
3,202,338	-				-2.4
3,202,338	-				-1.0
3,202,338	-				+0.4
3,202,338	-				-0.6
3,202,344	+				-1.2
3,202,587	-		BPHYT_RS33920	0.15	+0.4
3,202,587	-		BPHYT_RS33920	0.15	+1.5
3,202,625	+		BPHYT_RS33920	0.18	-3.9
3,202,625	+		BPHYT_RS33920	0.18	-1.5
3,202,749	-		BPHYT_RS33920	0.27	-2.8
3,202,749	-		BPHYT_RS33920	0.27	-1.5
3,202,757	+		BPHYT_RS33920	0.28	-0.8
3,202,757	+		BPHYT_RS33920	0.28	+0.8
3,202,915	-		BPHYT_RS33920	0.40	-3.5
3,203,054	+		BPHYT_RS33920	0.51	-3.5
3,203,055	-		BPHYT_RS33920	0.51	-1.4