Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33840

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,183,012	-		BPHYT_RS33835	0.54	-1.7
3,183,394	+		BPHYT_RS33835	0.86	-5.1
3,183,394	+		BPHYT_RS33835	0.86	-1.0
3,183,394	+		BPHYT_RS33835	0.86	-4.1
3,183,400	+		BPHYT_RS33835	0.87	-4.0
3,183,400	+		BPHYT_RS33835	0.87	-3.2
3,183,401	-		BPHYT_RS33835	0.87	-6.9
3,183,401	-		BPHYT_RS33835	0.87	-5.3
3,183,711	-				-0.6
3,183,996	+				-2.7
3,184,023	+				-4.3
3,184,023	+				-2.2
3,184,024	-		BPHYT_RS33840	0.10	-2.1
3,184,024	-		BPHYT_RS33840	0.10	-3.7
3,184,024	-		BPHYT_RS33840	0.10	-2.1
3,184,111	-		BPHYT_RS33840	0.16	-0.5
3,184,204	-		BPHYT_RS33840	0.22	-2.9
3,184,298	-		BPHYT_RS33840	0.28	-0.8
3,184,431	+		BPHYT_RS33840	0.36	-1.3
3,184,576	-		BPHYT_RS33840	0.46	-2.0
3,184,771	+		BPHYT_RS33840	0.58	-0.8
3,184,888	-		BPHYT_RS33840	0.66	-0.1
3,185,048	-		BPHYT_RS33840	0.76	-4.4
3,185,048	-		BPHYT_RS33840	0.76	+1.2
3,185,151	+		BPHYT_RS33840	0.83	-1.5
3,185,151	+		BPHYT_RS33840	0.83	-6.2
3,185,151	+		BPHYT_RS33840	0.83	-4.1
3,185,152	-		BPHYT_RS33840	0.83	-3.5
3,185,152	-		BPHYT_RS33840	0.83	-3.1
3,185,152	-		BPHYT_RS33840	0.83	-1.8
3,185,367	+				-3.2
3,185,367	+				-2.3
3,185,367	+				-1.4
3,185,368	-				-1.7
3,185,399	+				-2.2
3,185,399	+				-1.0
3,185,400	-				-3.9
3,185,406	-				-5.0
3,185,524	+				-4.8
3,185,524	+				-0.4
3,185,525	-				-0.1
3,185,525	-				+1.4
3,185,525	-				-3.0
3,185,596	+				-3.1
3,185,597	-				-0.3
3,185,631	+				-1.8
3,185,632	-				-0.3
3,185,924	-		BPHYT_RS33845	0.69	-1.3
3,185,924	-		BPHYT_RS33845	0.69	-0.1
3,185,924	-		BPHYT_RS33845	0.69	-0.1
3,185,924	-		BPHYT_RS33845	0.69	-0.3
3,186,051	+				-0.1
3,186,052	-				-3.3
3,186,087	-				+0.2