Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31005

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31000 and BPHYT_RS31005 are separated by 121 nucleotidesBPHYT_RS31005 and BPHYT_RS31010 are separated by 219 nucleotides BPHYT_RS31000: BPHYT_RS31000 - dTDP-glucose 4,6-dehydratase, at 2,509,890 to 2,510,951 _RS31000 BPHYT_RS31005: BPHYT_RS31005 - hypothetical protein, at 2,511,073 to 2,512,074 _RS31005 BPHYT_RS31010: BPHYT_RS31010 - arabinose 5-phosphate isomerase, at 2,512,294 to 2,513,229 _RS31010 Position (kb) 2511 2512 2513Strain fitness (log2 ratio) -1 0 1at 2510.276 kb on - strand, within BPHYT_RS31000

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,510,276 - BPHYT_RS31000 0.36 +0.1

Or see this region's nucleotide sequence