Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30765

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30760 and BPHYT_RS30765 overlap by 8 nucleotidesBPHYT_RS30765 and BPHYT_RS30770 are separated by 100 nucleotidesBPHYT_RS30770 and BPHYT_RS30775 are separated by 105 nucleotides BPHYT_RS30760: BPHYT_RS30760 - MmgE/PrpD family protein, at 2,456,446 to 2,457,801 _RS30760 BPHYT_RS30765: BPHYT_RS30765 - hypothetical protein, at 2,457,794 to 2,458,531 _RS30765 BPHYT_RS30770: BPHYT_RS30770 - hypothetical protein, at 2,458,632 to 2,459,177 _RS30770 BPHYT_RS30775: BPHYT_RS30775 - gluconate 2-dehydrogenase, at 2,459,283 to 2,460,038 _RS30775 Position (kb) 2457 2458 2459Strain fitness (log2 ratio) -3 -2 -1 0 1at 2456.853 kb on - strand, within BPHYT_RS30760at 2457.127 kb on - strand, within BPHYT_RS30760at 2458.631 kb on + strandat 2458.998 kb on + strand, within BPHYT_RS30770at 2458.999 kb on - strand, within BPHYT_RS30770at 2458.999 kb on - strand, within BPHYT_RS30770at 2459.025 kb on + strand, within BPHYT_RS30770

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,456,853 - BPHYT_RS30760 0.30 -1.8
2,457,127 - BPHYT_RS30760 0.50 -0.8
2,458,631 + -0.7
2,458,998 + BPHYT_RS30770 0.67 -1.0
2,458,999 - BPHYT_RS30770 0.67 -3.4
2,458,999 - BPHYT_RS30770 0.67 +1.3
2,459,025 + BPHYT_RS30770 0.72 +0.1

Or see this region's nucleotide sequence