Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30760

Experiment: Vogels_fungal_media; pH 5.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS30755 and BPHYT_RS30760 overlap by 4 nucleotidesBPHYT_RS30760 and BPHYT_RS30765 overlap by 8 nucleotidesBPHYT_RS30765 and BPHYT_RS30770 are separated by 100 nucleotides BPHYT_RS30755: BPHYT_RS30755 - MFS transporter, at 2,455,034 to 2,456,449 _RS30755 BPHYT_RS30760: BPHYT_RS30760 - MmgE/PrpD family protein, at 2,456,446 to 2,457,801 _RS30760 BPHYT_RS30765: BPHYT_RS30765 - hypothetical protein, at 2,457,794 to 2,458,531 _RS30765 BPHYT_RS30770: BPHYT_RS30770 - hypothetical protein, at 2,458,632 to 2,459,177 _RS30770 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -2 -1 0 1at 2455.488 kb on - strandat 2455.488 kb on - strand, within BPHYT_RS30755at 2456.216 kb on + strand, within BPHYT_RS30755at 2456.853 kb on - strand, within BPHYT_RS30760at 2457.127 kb on - strand, within BPHYT_RS30760at 2458.631 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
remove
2,455,488 - -1.2
2,455,488 - BPHYT_RS30755 0.32 +0.2
2,456,216 + BPHYT_RS30755 0.83 +0.7
2,456,853 - BPHYT_RS30760 0.30 -1.8
2,457,127 - BPHYT_RS30760 0.50 -0.8
2,458,631 + -0.7

Or see this region's nucleotide sequence