Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30740 and BPHYT_RS30745 are separated by 341 nucleotides BPHYT_RS30745 and BPHYT_RS30750 are separated by 148 nucleotides BPHYT_RS30750 and BPHYT_RS30755 are separated by 271 nucleotides
BPHYT_RS30740: BPHYT_RS30740 - alcohol dehydrogenase, at 2,452,246 to 2,453,232
_RS30740
BPHYT_RS30745: BPHYT_RS30745 - hypothetical protein, at 2,453,574 to 2,453,921
_RS30745
BPHYT_RS30750: BPHYT_RS30750 - GntR family transcriptional regulator, at 2,454,070 to 2,454,762
_RS30750
BPHYT_RS30755: BPHYT_RS30755 - MFS transporter, at 2,455,034 to 2,456,449
_RS30755
Position (kb)
2454
2455 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2453.338 kb on - strand at 2453.338 kb on - strand at 2453.458 kb on - strand at 2453.524 kb on - strand at 2453.585 kb on + strand at 2453.585 kb on + strand at 2453.585 kb on + strand at 2453.709 kb on + strand, within BPHYT_RS30745 at 2453.812 kb on - strand, within BPHYT_RS30745 at 2453.919 kb on + strand at 2453.920 kb on - strand at 2454.469 kb on + strand, within BPHYT_RS30750 at 2454.470 kb on - strand, within BPHYT_RS30750 at 2454.470 kb on - strand, within BPHYT_RS30750 at 2454.949 kb on - strand at 2455.037 kb on + strand at 2455.038 kb on - strand at 2455.038 kb on - strand at 2455.038 kb on - strand at 2455.118 kb on + strand at 2455.190 kb on + strand, within BPHYT_RS30755 at 2455.190 kb on + strand, within BPHYT_RS30755 at 2455.190 kb on + strand, within BPHYT_RS30755 at 2455.191 kb on - strand, within BPHYT_RS30755 at 2455.191 kb on - strand, within BPHYT_RS30755 at 2455.192 kb on + strand, within BPHYT_RS30755 at 2455.193 kb on - strand, within BPHYT_RS30755 at 2455.193 kb on - strand, within BPHYT_RS30755 at 2455.377 kb on - strand, within BPHYT_RS30755 at 2455.488 kb on - strand at 2455.488 kb on - strand, within BPHYT_RS30755
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 2,453,338 - +0.1 2,453,338 - -1.2 2,453,458 - +0.4 2,453,524 - -0.8 2,453,585 + -0.4 2,453,585 + -0.4 2,453,585 + +0.4 2,453,709 + BPHYT_RS30745 0.39 -1.6 2,453,812 - BPHYT_RS30745 0.68 +2.0 2,453,919 + +0.7 2,453,920 - +0.2 2,454,469 + BPHYT_RS30750 0.58 -1.7 2,454,470 - BPHYT_RS30750 0.58 -2.2 2,454,470 - BPHYT_RS30750 0.58 -0.7 2,454,949 - +0.1 2,455,037 + -3.3 2,455,038 - +0.4 2,455,038 - +0.4 2,455,038 - +0.0 2,455,118 + -0.4 2,455,190 + BPHYT_RS30755 0.11 -3.0 2,455,190 + BPHYT_RS30755 0.11 +2.4 2,455,190 + BPHYT_RS30755 0.11 +0.9 2,455,191 - BPHYT_RS30755 0.11 -1.5 2,455,191 - BPHYT_RS30755 0.11 -0.5 2,455,192 + BPHYT_RS30755 0.11 +0.6 2,455,193 - BPHYT_RS30755 0.11 +3.3 2,455,193 - BPHYT_RS30755 0.11 -2.9 2,455,377 - BPHYT_RS30755 0.24 +0.2 2,455,488 - -1.2 2,455,488 - BPHYT_RS30755 0.32 +0.2
Or see this region's nucleotide sequence