Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30010

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30000 and BPHYT_RS30005 are separated by 89 nucleotidesBPHYT_RS30005 and BPHYT_RS30010 are separated by 80 nucleotidesBPHYT_RS30010 and BPHYT_RS30015 are separated by 531 nucleotides BPHYT_RS30000: BPHYT_RS30000 - hypothetical protein, at 2,285,690 to 2,286,484 _RS30000 BPHYT_RS30005: BPHYT_RS30005 - hypothetical protein, at 2,286,574 to 2,286,834 _RS30005 BPHYT_RS30010: BPHYT_RS30010 - cell division protein, at 2,286,915 to 2,288,819 _RS30010 BPHYT_RS30015: BPHYT_RS30015 - 2-nitropropane dioxygenase, at 2,289,351 to 2,290,376 _RS30015 Position (kb) 2286 2287 2288 2289Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2286.139 kb on - strand, within BPHYT_RS30000at 2286.139 kb on - strand, within BPHYT_RS30000at 2286.203 kb on + strand, within BPHYT_RS30000at 2286.204 kb on - strand, within BPHYT_RS30000at 2287.045 kb on + strandat 2288.522 kb on - strand, within BPHYT_RS30010at 2288.858 kb on - strandat 2289.019 kb on + strandat 2289.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,286,139 - BPHYT_RS30000 0.56 +0.5
2,286,139 - BPHYT_RS30000 0.56 -0.6
2,286,203 + BPHYT_RS30000 0.65 +0.3
2,286,204 - BPHYT_RS30000 0.65 -0.1
2,287,045 + +0.1
2,288,522 - BPHYT_RS30010 0.84 -4.7
2,288,858 - +0.2
2,289,019 + -1.4
2,289,260 - -0.9

Or see this region's nucleotide sequence