Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29435

Experiment: Vogels_fungal_media; pH 5.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS29430 and BPHYT_RS29435 are separated by 66 nucleotidesBPHYT_RS29435 and BPHYT_RS29440 are separated by 133 nucleotides BPHYT_RS29430: BPHYT_RS29430 - major facilitator transporter, at 2,157,249 to 2,158,550 _RS29430 BPHYT_RS29435: BPHYT_RS29435 - amidohydrolase, at 2,158,617 to 2,159,807 _RS29435 BPHYT_RS29440: BPHYT_RS29440 - LysR family transcriptional regulator, at 2,159,941 to 2,160,849 _RS29440 Position (kb) 2158 2159 2160Strain fitness (log2 ratio) -2 -1 0 1 2at 2157.760 kb on + strand, within BPHYT_RS29430at 2157.761 kb on - strand, within BPHYT_RS29430at 2157.761 kb on - strand, within BPHYT_RS29430at 2157.776 kb on - strand, within BPHYT_RS29430at 2158.210 kb on + strand, within BPHYT_RS29430at 2158.694 kb on - strandat 2159.926 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
remove
2,157,760 + BPHYT_RS29430 0.39 -0.8
2,157,761 - BPHYT_RS29430 0.39 +2.1
2,157,761 - BPHYT_RS29430 0.39 -0.2
2,157,776 - BPHYT_RS29430 0.40 +0.3
2,158,210 + BPHYT_RS29430 0.74 -2.3
2,158,694 - -0.9
2,159,926 + -0.0

Or see this region's nucleotide sequence