Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28705

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,992,771	+		BPHYT_RS28695	0.85	-0.1
1,992,772	-		BPHYT_RS28695	0.85	+0.4
1,992,805	+		BPHYT_RS28695	0.88	+1.7
1,992,805	+		BPHYT_RS28695	0.88	-2.6
1,992,806	-		BPHYT_RS28695	0.88	-2.9
1,992,823	+		BPHYT_RS28695	0.89	+1.2
1,992,824	-		BPHYT_RS28695	0.89	+0.5
1,992,824	-		BPHYT_RS28695	0.89	-0.3
1,992,824	-		BPHYT_RS28695	0.89	+0.5
1,992,870	-				+0.5
1,993,462	+				+0.2
1,993,463	-				-1.5
1,993,493	-				-0.9
1,993,499	-				+0.1
1,993,693	-		BPHYT_RS28705	0.11	-4.2
1,994,587	+				-2.9
1,994,587	+				+2.5
1,994,704	+		BPHYT_RS28710	0.14	+0.2
1,994,966	-		BPHYT_RS28710	0.32	+0.1
1,995,301	+		BPHYT_RS28710	0.56	-0.4
1,995,387	-		BPHYT_RS28710	0.62	+0.3