Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28520

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,953,185	+		BPHYT_RS28515	0.85	-0.4
1,953,185	+		BPHYT_RS28515	0.85	+1.6
1,953,186	-		BPHYT_RS28515	0.86	+0.0
1,953,247	-				-0.2
1,953,291	+				-0.8
1,953,459	+				+0.3
1,953,460	-				-0.0
1,953,503	+				+0.9
1,953,528	-				+3.9
1,953,552	-				+1.0
1,953,657	+				+1.4
1,953,658	-				-1.0
1,953,669	+				+0.7
1,953,669	+				+0.1
1,953,669	+				-1.5
1,953,883	+				+0.3
1,954,096	+		BPHYT_RS28520	0.16	+0.8
1,954,096	+		BPHYT_RS28520	0.16	+1.0
1,954,387	-		BPHYT_RS28520	0.34	+0.6
1,954,693	-		BPHYT_RS28520	0.53	-0.4
1,954,801	-		BPHYT_RS28520	0.60	+1.7
1,955,208	-		BPHYT_RS28520	0.86	+0.9
1,955,222	-		BPHYT_RS28520	0.86	-1.9
1,955,495	-				-0.5
1,955,584	+				+0.5
1,955,759	+				-0.3
1,955,823	+				+0.7
1,956,076	+		BPHYT_RS28525	0.23	+1.3
1,956,077	-		BPHYT_RS28525	0.23	+0.8
1,956,187	-		BPHYT_RS28525	0.31	-3.1
1,956,342	+		BPHYT_RS28525	0.41	+0.0
1,956,393	+		BPHYT_RS28525	0.44	+0.8
1,956,394	-		BPHYT_RS28525	0.44	+0.0