Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28040

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,854,457	+		BPHYT_RS28035	0.88	+1.1
1,854,604	+				-1.9
1,854,625	-				-0.2
1,854,690	-				-1.6
1,854,778	+				+0.8
1,854,778	+				-1.3
1,854,778	+				+0.9
1,854,778	+				-2.6
1,855,310	+		BPHYT_RS28040	0.47	-2.1
1,855,310	+		BPHYT_RS28040	0.47	-1.5
1,855,310	+		BPHYT_RS28040	0.47	-4.3
1,855,641	-		BPHYT_RS28040	0.76	+0.4
1,855,723	+		BPHYT_RS28040	0.83	-3.4
1,855,724	-		BPHYT_RS28040	0.84	-0.0
1,855,897	+				-0.4
1,856,095	+				-1.6
1,856,095	+				-0.5
1,856,096	-				+0.5
1,856,096	-				-2.5
1,856,177	-				-0.1
1,856,181	-				-0.5
1,856,205	+				-0.5
1,856,337	+		BPHYT_RS28045	0.15	-0.6
1,856,338	-		BPHYT_RS28045	0.15	+0.3
1,856,506	+		BPHYT_RS28045	0.31	+0.3
1,856,507	-		BPHYT_RS28045	0.31	+0.8
1,856,761	-		BPHYT_RS28045	0.56	+1.0
1,856,761	-		BPHYT_RS28045	0.56	-3.0
1,856,862	+		BPHYT_RS28045	0.66	-0.1