Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26280

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26275 and BPHYT_RS26280 are separated by 145 nucleotidesBPHYT_RS26280 and BPHYT_RS26285 are separated by 152 nucleotides BPHYT_RS26275: BPHYT_RS26275 - membrane protein, at 1,465,069 to 1,467,102 _RS26275 BPHYT_RS26280: BPHYT_RS26280 - hypothetical protein, at 1,467,248 to 1,467,427 _RS26280 BPHYT_RS26285: BPHYT_RS26285 - glycogen debranching protein, at 1,467,580 to 1,469,796 _RS26285 Position (kb) 1467 1468Strain fitness (log2 ratio) -2 -1 0 1 2at 1466.530 kb on + strand, within BPHYT_RS26275at 1467.187 kb on - strandat 1467.187 kb on - strandat 1467.250 kb on - strandat 1467.306 kb on - strand, within BPHYT_RS26280at 1467.379 kb on - strand, within BPHYT_RS26280at 1467.474 kb on - strandat 1468.155 kb on - strand, within BPHYT_RS26285at 1468.383 kb on - strand, within BPHYT_RS26285at 1468.383 kb on - strand, within BPHYT_RS26285

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,466,530 + BPHYT_RS26275 0.72 -2.4
1,467,187 - -1.0
1,467,187 - +1.1
1,467,250 - +0.7
1,467,306 - BPHYT_RS26280 0.32 -0.3
1,467,379 - BPHYT_RS26280 0.73 -1.7
1,467,474 - +0.7
1,468,155 - BPHYT_RS26285 0.26 +2.0
1,468,383 - BPHYT_RS26285 0.36 -1.3
1,468,383 - BPHYT_RS26285 0.36 -1.2

Or see this region's nucleotide sequence