Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26270

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26265 and BPHYT_RS26270 are separated by 28 nucleotidesBPHYT_RS26270 and BPHYT_RS26275 are separated by 143 nucleotides BPHYT_RS26265: BPHYT_RS26265 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 1,463,149 to 1,464,714 _RS26265 BPHYT_RS26270: BPHYT_RS26270 - hypothetical protein, at 1,464,743 to 1,464,925 _RS26270 BPHYT_RS26275: BPHYT_RS26275 - membrane protein, at 1,465,069 to 1,467,102 _RS26275 Position (kb) 1464 1465Strain fitness (log2 ratio) -2 -1 0 1at 1463.795 kb on - strand, within BPHYT_RS26265at 1464.210 kb on - strand, within BPHYT_RS26265at 1464.472 kb on + strand, within BPHYT_RS26265at 1464.998 kb on + strandat 1464.998 kb on + strandat 1465.323 kb on - strand, within BPHYT_RS26275at 1465.759 kb on + strand, within BPHYT_RS26275at 1465.806 kb on - strand, within BPHYT_RS26275

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,463,795 - BPHYT_RS26265 0.41 +1.0
1,464,210 - BPHYT_RS26265 0.68 +1.6
1,464,472 + BPHYT_RS26265 0.84 +0.7
1,464,998 + +0.8
1,464,998 + +0.7
1,465,323 - BPHYT_RS26275 0.12 -2.0
1,465,759 + BPHYT_RS26275 0.34 -0.0
1,465,806 - BPHYT_RS26275 0.36 -0.8

Or see this region's nucleotide sequence