Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25855

Experiment: Vogels_fungal_media; pH 5.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS25850 and BPHYT_RS25855 are separated by 132 nucleotidesBPHYT_RS25855 and BPHYT_RS25860 are separated by 523 nucleotides BPHYT_RS25850: BPHYT_RS25850 - RND transporter, at 1,376,332 to 1,377,819 _RS25850 BPHYT_RS25855: BPHYT_RS25855 - hypothetical protein, at 1,377,952 to 1,381,713 _RS25855 BPHYT_RS25860: BPHYT_RS25860 - hypothetical protein, at 1,382,237 to 1,383,070 _RS25860 Position (kb) 1377 1378 1379 1380 1381 1382Strain fitness (log2 ratio) -2 -1 0 1 2at 1377.813 kb on + strandat 1377.986 kb on - strandat 1378.018 kb on + strandat 1378.070 kb on - strandat 1378.188 kb on - strandat 1378.188 kb on - strandat 1378.259 kb on - strandat 1378.335 kb on + strand, within BPHYT_RS25855at 1378.561 kb on - strand, within BPHYT_RS25855at 1378.721 kb on + strand, within BPHYT_RS25855at 1378.722 kb on - strand, within BPHYT_RS25855at 1378.738 kb on + strand, within BPHYT_RS25855at 1378.952 kb on + strand, within BPHYT_RS25855at 1379.578 kb on - strand, within BPHYT_RS25855at 1379.781 kb on - strand, within BPHYT_RS25855at 1379.961 kb on + strand, within BPHYT_RS25855at 1380.422 kb on - strand, within BPHYT_RS25855at 1380.496 kb on + strand, within BPHYT_RS25855at 1380.496 kb on + strand, within BPHYT_RS25855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
remove
1,377,813 + +0.1
1,377,986 - +0.1
1,378,018 + +0.7
1,378,070 - +2.0
1,378,188 - +0.2
1,378,188 - -1.0
1,378,259 - +1.9
1,378,335 + BPHYT_RS25855 0.10 +0.3
1,378,561 - BPHYT_RS25855 0.16 -0.4
1,378,721 + BPHYT_RS25855 0.20 -1.9
1,378,722 - BPHYT_RS25855 0.20 -0.3
1,378,738 + BPHYT_RS25855 0.21 +0.8
1,378,952 + BPHYT_RS25855 0.27 +0.3
1,379,578 - BPHYT_RS25855 0.43 +0.5
1,379,781 - BPHYT_RS25855 0.49 -0.1
1,379,961 + BPHYT_RS25855 0.53 -0.3
1,380,422 - BPHYT_RS25855 0.66 -1.3
1,380,496 + BPHYT_RS25855 0.68 +1.7
1,380,496 + BPHYT_RS25855 0.68 +0.3

Or see this region's nucleotide sequence