Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25830 and BPHYT_RS25835 are separated by 433 nucleotides BPHYT_RS25835 and BPHYT_RS25840 are separated by 270 nucleotides BPHYT_RS25840 and BPHYT_RS25845 are separated by 18 nucleotides
BPHYT_RS25830: BPHYT_RS25830 - sugar ABC transporter substrate-binding protein, at 1,369,527 to 1,370,672
_RS25830
BPHYT_RS25835: BPHYT_RS25835 - hypothetical protein, at 1,371,106 to 1,371,393
_RS25835
BPHYT_RS25840: BPHYT_RS25840 - acriflavin resistance protein, at 1,371,664 to 1,374,918
_RS25840
BPHYT_RS25845: BPHYT_RS25845 - RND transporter MFP subunit, at 1,374,937 to 1,376,304
_RS25845
Position (kb) 1371
1372
1373
1374
1375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1370.774 kb on + strand at 1370.774 kb on + strand at 1370.778 kb on - strand at 1370.814 kb on + strand at 1370.815 kb on - strand at 1370.818 kb on + strand at 1371.544 kb on + strand at 1371.545 kb on - strand at 1372.053 kb on + strand, within BPHYT_RS25840 at 1372.053 kb on + strand, within BPHYT_RS25840 at 1372.053 kb on + strand, within BPHYT_RS25840 at 1372.058 kb on - strand, within BPHYT_RS25840 at 1372.058 kb on - strand, within BPHYT_RS25840 at 1372.058 kb on - strand, within BPHYT_RS25840 at 1372.227 kb on + strand, within BPHYT_RS25840 at 1372.342 kb on + strand, within BPHYT_RS25840 at 1372.342 kb on + strand, within BPHYT_RS25840 at 1373.531 kb on - strand, within BPHYT_RS25840 at 1373.611 kb on + strand, within BPHYT_RS25840 at 1374.228 kb on + strand, within BPHYT_RS25840 at 1374.335 kb on + strand, within BPHYT_RS25840 at 1375.382 kb on - strand, within BPHYT_RS25845
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,370,774 + +1.6 1,370,774 + +0.1 1,370,778 - +2.4 1,370,814 + +1.3 1,370,815 - -1.3 1,370,818 + -2.0 1,371,544 + -0.4 1,371,545 - +0.7 1,372,053 + BPHYT_RS25840 0.12 +0.4 1,372,053 + BPHYT_RS25840 0.12 +2.4 1,372,053 + BPHYT_RS25840 0.12 +1.4 1,372,058 - BPHYT_RS25840 0.12 -0.2 1,372,058 - BPHYT_RS25840 0.12 +0.5 1,372,058 - BPHYT_RS25840 0.12 +0.6 1,372,227 + BPHYT_RS25840 0.17 +0.1 1,372,342 + BPHYT_RS25840 0.21 -0.4 1,372,342 + BPHYT_RS25840 0.21 +0.6 1,373,531 - BPHYT_RS25840 0.57 -1.5 1,373,611 + BPHYT_RS25840 0.60 +0.7 1,374,228 + BPHYT_RS25840 0.79 -0.2 1,374,335 + BPHYT_RS25840 0.82 -1.1 1,375,382 - BPHYT_RS25845 0.33 -3.6
Or see this region's nucleotide sequence