Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25800

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25795 and BPHYT_RS25800 are separated by 95 nucleotidesBPHYT_RS25800 and BPHYT_RS25805 are separated by 39 nucleotides BPHYT_RS25795: BPHYT_RS25795 - LacI family transcription regulator, at 1,359,802 to 1,360,806 _RS25795 BPHYT_RS25800: BPHYT_RS25800 - sugar ABC transporter permease, at 1,360,902 to 1,361,960 _RS25800 BPHYT_RS25805: BPHYT_RS25805 - deoxyribose kinase (EC 2.7.1.15) (from data), at 1,362,000 to 1,362,986 _RS25805 Position (kb) 1360 1361 1362Strain fitness (log2 ratio) -3 -2 -1 0 1at 1361.189 kb on - strand, within BPHYT_RS25800at 1361.276 kb on - strand, within BPHYT_RS25800at 1362.242 kb on - strand, within BPHYT_RS25805at 1362.421 kb on + strand, within BPHYT_RS25805at 1362.931 kb on + strandat 1362.931 kb on + strandat 1362.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,361,189 - BPHYT_RS25800 0.27 -1.0
1,361,276 - BPHYT_RS25800 0.35 -0.1
1,362,242 - BPHYT_RS25805 0.25 -0.3
1,362,421 + BPHYT_RS25805 0.43 -0.7
1,362,931 + -3.2
1,362,931 + +1.5
1,362,932 - -2.2

Or see this region's nucleotide sequence