Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25695

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25685 and BPHYT_RS25690 are separated by 14 nucleotidesBPHYT_RS25690 and BPHYT_RS25695 are separated by 56 nucleotidesBPHYT_RS25695 and BPHYT_RS25700 are separated by 127 nucleotides BPHYT_RS25685: BPHYT_RS25685 - damage-inducible protein DinB, at 1,336,038 to 1,336,556 _RS25685 BPHYT_RS25690: BPHYT_RS25690 - GntR family transcriptional regulator, at 1,336,571 to 1,337,380 _RS25690 BPHYT_RS25695: BPHYT_RS25695 - enoyl-CoA hydratase, at 1,337,437 to 1,338,168 _RS25695 BPHYT_RS25700: BPHYT_RS25700 - MFS transporter, at 1,338,296 to 1,339,696 _RS25700 Position (kb) 1337 1338 1339Strain fitness (log2 ratio) -2 -1 0 1at 1337.192 kb on + strand, within BPHYT_RS25690at 1337.422 kb on - strandat 1338.404 kb on + strandat 1338.554 kb on - strand, within BPHYT_RS25700at 1338.558 kb on - strand, within BPHYT_RS25700at 1338.860 kb on + strand, within BPHYT_RS25700at 1339.108 kb on + strand, within BPHYT_RS25700

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,337,192 + BPHYT_RS25690 0.77 -2.6
1,337,422 - +0.1
1,338,404 + +0.8
1,338,554 - BPHYT_RS25700 0.18 -1.3
1,338,558 - BPHYT_RS25700 0.19 +0.4
1,338,860 + BPHYT_RS25700 0.40 +0.2
1,339,108 + BPHYT_RS25700 0.58 -0.1

Or see this region's nucleotide sequence