Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25280 and BPHYT_RS25285 are separated by 286 nucleotides BPHYT_RS25285 and BPHYT_RS25290 are separated by 115 nucleotides BPHYT_RS25290 and BPHYT_RS25295 are separated by 14 nucleotides
BPHYT_RS25280: BPHYT_RS25280 - diguanylate cyclase, at 1,247,871 to 1,249,322
_RS25280
BPHYT_RS25285: BPHYT_RS25285 - AraC family transcriptional regulator, at 1,249,609 to 1,250,643
_RS25285
BPHYT_RS25290: BPHYT_RS25290 - membrane protein, at 1,250,759 to 1,251,451
_RS25290
BPHYT_RS25295: BPHYT_RS25295 - cobalt transporter, at 1,251,466 to 1,251,675
_RS25295
Position (kb) 1249
1250
1251 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1248.621 kb on + strand, within BPHYT_RS25280 at 1248.628 kb on - strand, within BPHYT_RS25280 at 1248.972 kb on + strand, within BPHYT_RS25280 at 1248.973 kb on - strand, within BPHYT_RS25280 at 1248.973 kb on - strand, within BPHYT_RS25280 at 1249.458 kb on + strand at 1249.512 kb on + strand at 1249.542 kb on + strand at 1249.758 kb on + strand, within BPHYT_RS25285 at 1249.973 kb on + strand, within BPHYT_RS25285 at 1249.973 kb on + strand, within BPHYT_RS25285 at 1250.529 kb on - strand, within BPHYT_RS25285 at 1250.552 kb on - strand at 1250.686 kb on - strand at 1251.344 kb on + strand, within BPHYT_RS25290 at 1251.345 kb on - strand, within BPHYT_RS25290 at 1251.345 kb on - strand, within BPHYT_RS25290 at 1251.437 kb on + strand at 1251.521 kb on + strand, within BPHYT_RS25295
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,248,621 + BPHYT_RS25280 0.52 +0.3 1,248,628 - BPHYT_RS25280 0.52 +0.9 1,248,972 + BPHYT_RS25280 0.76 +0.8 1,248,973 - BPHYT_RS25280 0.76 -1.6 1,248,973 - BPHYT_RS25280 0.76 +0.9 1,249,458 + +0.3 1,249,512 + +0.1 1,249,542 + -0.2 1,249,758 + BPHYT_RS25285 0.14 -1.9 1,249,973 + BPHYT_RS25285 0.35 -0.0 1,249,973 + BPHYT_RS25285 0.35 -2.1 1,250,529 - BPHYT_RS25285 0.89 -1.2 1,250,552 - +0.4 1,250,686 - +0.1 1,251,344 + BPHYT_RS25290 0.84 -1.1 1,251,345 - BPHYT_RS25290 0.85 -1.0 1,251,345 - BPHYT_RS25290 0.85 -2.8 1,251,437 + -3.4 1,251,521 + BPHYT_RS25295 0.26 +0.1
Or see this region's nucleotide sequence