Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25275

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25270 and BPHYT_RS25275 are separated by 706 nucleotidesBPHYT_RS25275 and BPHYT_RS25280 are separated by 415 nucleotides BPHYT_RS25270: BPHYT_RS25270 - multidrug MFS transporter, at 1,244,509 to 1,245,864 _RS25270 BPHYT_RS25275: BPHYT_RS25275 - MarR family transcriptional regulator, at 1,246,571 to 1,247,455 _RS25275 BPHYT_RS25280: BPHYT_RS25280 - diguanylate cyclase, at 1,247,871 to 1,249,322 _RS25280 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1 2at 1245.966 kb on + strandat 1246.016 kb on + strandat 1246.093 kb on + strandat 1246.148 kb on - strandat 1246.428 kb on + strandat 1246.466 kb on - strandat 1246.486 kb on + strandat 1246.758 kb on - strand, within BPHYT_RS25275at 1246.760 kb on - strand, within BPHYT_RS25275at 1247.207 kb on - strand, within BPHYT_RS25275at 1247.552 kb on - strandat 1247.602 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,245,966 + +0.1
1,246,016 + +1.5
1,246,093 + -2.1
1,246,148 - -0.1
1,246,428 + -0.6
1,246,466 - -2.3
1,246,486 + +1.2
1,246,758 - BPHYT_RS25275 0.21 +2.4
1,246,760 - BPHYT_RS25275 0.21 -0.1
1,247,207 - BPHYT_RS25275 0.72 -0.1
1,247,552 - -1.4
1,247,602 + -0.5

Or see this region's nucleotide sequence