Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25265

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25255 and BPHYT_RS25260 are separated by 110 nucleotidesBPHYT_RS25260 and BPHYT_RS25265 are separated by 33 nucleotidesBPHYT_RS25265 and BPHYT_RS25270 are separated by 169 nucleotides BPHYT_RS25255: BPHYT_RS25255 - LysR family transcriptional regulator, at 1,240,585 to 1,241,505 _RS25255 BPHYT_RS25260: BPHYT_RS25260 - glutathione S-transferase, at 1,241,616 to 1,242,257 _RS25260 BPHYT_RS25265: BPHYT_RS25265 - pyridoxamine 5'-phosphate oxidase, at 1,242,291 to 1,244,339 _RS25265 BPHYT_RS25270: BPHYT_RS25270 - multidrug MFS transporter, at 1,244,509 to 1,245,864 _RS25270 Position (kb) 1242 1243 1244 1245Strain fitness (log2 ratio) -3 -2 -1 0 1at 1242.046 kb on + strand, within BPHYT_RS25260at 1242.302 kb on + strandat 1242.765 kb on - strand, within BPHYT_RS25265at 1243.093 kb on - strand, within BPHYT_RS25265at 1243.424 kb on + strand, within BPHYT_RS25265at 1243.447 kb on - strand, within BPHYT_RS25265at 1243.751 kb on + strand, within BPHYT_RS25265at 1243.906 kb on - strand, within BPHYT_RS25265at 1243.906 kb on - strand, within BPHYT_RS25265at 1244.699 kb on - strand, within BPHYT_RS25270at 1244.777 kb on + strand, within BPHYT_RS25270at 1245.249 kb on + strand, within BPHYT_RS25270

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,242,046 + BPHYT_RS25260 0.67 -1.7
1,242,302 + -0.1
1,242,765 - BPHYT_RS25265 0.23 -1.0
1,243,093 - BPHYT_RS25265 0.39 -0.7
1,243,424 + BPHYT_RS25265 0.55 -0.0
1,243,447 - BPHYT_RS25265 0.56 -2.1
1,243,751 + BPHYT_RS25265 0.71 +0.8
1,243,906 - BPHYT_RS25265 0.79 +0.4
1,243,906 - BPHYT_RS25265 0.79 +0.2
1,244,699 - BPHYT_RS25270 0.14 +0.5
1,244,777 + BPHYT_RS25270 0.20 -3.4
1,245,249 + BPHYT_RS25270 0.55 +1.4

Or see this region's nucleotide sequence