Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25005

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25000 and BPHYT_RS25005 are separated by 38 nucleotidesBPHYT_RS25005 and BPHYT_RS25010 are separated by 194 nucleotides BPHYT_RS25000: BPHYT_RS25000 - MFS transporter, at 1,178,594 to 1,179,838 _RS25000 BPHYT_RS25005: BPHYT_RS25005 - FMN reductase, at 1,179,877 to 1,180,422 _RS25005 BPHYT_RS25010: BPHYT_RS25010 - N5,N10-methylene tetrahydromethanopterin reductase, at 1,180,617 to 1,182,008 _RS25010 Position (kb) 1179 1180 1181Strain fitness (log2 ratio) -2 -1 0 1 2at 1179.309 kb on + strand, within BPHYT_RS25000at 1179.310 kb on - strand, within BPHYT_RS25000at 1179.310 kb on - strand, within BPHYT_RS25000at 1180.002 kb on + strand, within BPHYT_RS25005at 1180.003 kb on - strand, within BPHYT_RS25005at 1180.747 kb on + strandat 1180.818 kb on - strand, within BPHYT_RS25010at 1180.849 kb on - strand, within BPHYT_RS25010at 1180.849 kb on - strand, within BPHYT_RS25010at 1181.336 kb on - strand, within BPHYT_RS25010

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,179,309 + BPHYT_RS25000 0.57 -0.4
1,179,310 - BPHYT_RS25000 0.58 -0.1
1,179,310 - BPHYT_RS25000 0.58 +1.2
1,180,002 + BPHYT_RS25005 0.23 -2.1
1,180,003 - BPHYT_RS25005 0.23 +0.3
1,180,747 + +2.7
1,180,818 - BPHYT_RS25010 0.14 -0.4
1,180,849 - BPHYT_RS25010 0.17 +1.7
1,180,849 - BPHYT_RS25010 0.17 +0.4
1,181,336 - BPHYT_RS25010 0.52 +0.0

Or see this region's nucleotide sequence