Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24160 and BPHYT_RS24165 are separated by 51 nucleotides BPHYT_RS24165 and BPHYT_RS24170 overlap by 4 nucleotides BPHYT_RS24170 and BPHYT_RS24175 are separated by 587 nucleotides
BPHYT_RS24160: BPHYT_RS24160 - D-galactarate dehydratase, at 988,328 to 989,917
_RS24160
BPHYT_RS24165: BPHYT_RS24165 - NAD-dependent dehydratase, at 989,969 to 990,811
_RS24165
BPHYT_RS24170: BPHYT_RS24170 - gluconolactonase, at 990,808 to 991,737
_RS24170
BPHYT_RS24175: BPHYT_RS24175 - C4-dicarboxylate ABC transporter, at 992,325 to 993,317
_RS24175
Position (kb) 990
991
992 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 989.962 kb on + strand at 989.963 kb on - strand at 989.963 kb on - strand at 989.963 kb on - strand at 990.278 kb on + strand, within BPHYT_RS24165 at 990.449 kb on + strand, within BPHYT_RS24165 at 990.452 kb on + strand, within BPHYT_RS24165 at 990.615 kb on - strand, within BPHYT_RS24165 at 991.342 kb on + strand, within BPHYT_RS24170 at 991.343 kb on - strand, within BPHYT_RS24170 at 991.343 kb on - strand, within BPHYT_RS24170 at 991.994 kb on - strand at 992.040 kb on + strand at 992.330 kb on + strand at 992.331 kb on - strand at 992.446 kb on - strand, within BPHYT_RS24175 at 992.531 kb on + strand, within BPHYT_RS24175
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 989,962 + +0.4 989,963 - +1.4 989,963 - +0.8 989,963 - +0.1 990,278 + BPHYT_RS24165 0.37 -0.1 990,449 + BPHYT_RS24165 0.57 -0.4 990,452 + BPHYT_RS24165 0.57 -0.2 990,615 - BPHYT_RS24165 0.77 +1.1 991,342 + BPHYT_RS24170 0.57 -2.8 991,343 - BPHYT_RS24170 0.58 +0.6 991,343 - BPHYT_RS24170 0.58 -0.0 991,994 - +0.5 992,040 + +0.9 992,330 + +0.8 992,331 - +0.9 992,446 - BPHYT_RS24175 0.12 -0.0 992,531 + BPHYT_RS24175 0.21 +0.1
Or see this region's nucleotide sequence